Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1385.5 685 100.0
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1272.7 687 90.7
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1269.2 687 90.4
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1247.3 691 89.1
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1245.7 678 89.8
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1236.9 678 88.8
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1235.7 685 88.2
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1233.8 684 88.9
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1233.0 685 88.0
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1230.7 683 88.3
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1229.2 680 88.2
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1226.5 680 87.9
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1224.2 685 88.0
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1217.2 681 88.3
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1217.2 690 87.0
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1211.4 690 86.7
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1209.9 686 87.3
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1208.7 679 86.7
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1208.4 686 86.2
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1205.7 687 87.0
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1205.3 688 86.6
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1203.0 701 85.3
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1203.0 701 85.3
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1199.5 689 86.2
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1199.1 687 86.3
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1199.1 686 85.1
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1196.4 685 85.8
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1194.9 686 85.4
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1194.1 682 86.1
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1192.9 689 86.1
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1192.6 679 86.6
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1192.6 679 85.7
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1191.8 686 85.6
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1191.4 688 84.9
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1191.0 682 85.8
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1190.6 679 85.9
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1189.9 677 86.4
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1189.9 688 85.6
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1188.7 688 85.6
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1188.3 679 85.4
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1187.6 688 85.0
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1186.0 678 85.4
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1183.7 688 84.3
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1180.6 686 84.4
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1174.1 658 88.3
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1172.9 678 84.7
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1171.4 681 83.4
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1169.8 740 79.9
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1169.5 656 87.0
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1167.5 684 84.5
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1167.5 734 80.5
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1164.1 681 83.4
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1163.3 713 81.8
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1162.9 680 84.1
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1161.4 686 84.0
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1156.7 687 83.8
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1154.8 713 80.4
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1152.9 747 77.2
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1152.1 688 83.9
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1152.1 685 83.2
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1148.7 685 82.8
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1147.1 678 82.6
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1134.4 688 81.1
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1134.0 678 82.9
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1133.6 685 82.0
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1132.5 685 80.9
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1130.9 727 78.4
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1127.5 639 87.5
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1124.4 679 80.9
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1122.8 678 82.2
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1121.7 638 86.1
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1121.3 678 82.2
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1116.3 680 80.3
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1115.5 679 80.1
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1111.3 677 80.4
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1105.9 679 79.5
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1105.1 679 79.8
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1097.8 679 80.7
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1096.6 681 79.0
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1093.2 682 79.0
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1093.2 682 79.0
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1092.4 809 71.3
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1088.9 681 78.7
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1088.9 684 78.4
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1084.3 684 78.5
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1082.4 683 78.9
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1082.4 685 78.5
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1078.5 684 77.9
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1077.8 683 78.3
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1077.4 687 76.6
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1076.6 683 78.2
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 9.4e-312 1072.8 711 78.3
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 3.3e-311 1071.2 604 87.4
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 7.0e-311 1070.1 687 79.2
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 1.6e-310 1068.9 598 87.5
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 4.6e-310 1067.4 600 87.5
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 7.7e-297 1023.5 678 75.5
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 2.9e-280 968.4 723 70.8
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 4.5e-273 944.5 529 88.5
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 6.1e-262 907.5 668 70.7
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.0e-260 902.5 584 78.4
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 4.4e-260 901.4 722 66.1
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 2.1e-225 786.2 686 58.0
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 4.8e-214 748.4 680 56.6
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 9.3e-202 707.6 690 53.2
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.6e-201 706.8 435 81.6
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 1.0e-200 704.1 690 56.7
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.7e-187 660.2 692 50.3
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 1.1e-183 647.5 388 79.4
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 1.3e-182 644.0 899 40.4
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 7.4e-175 618.2 601 55.7
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 4.2e-170 602.4 343 84.3
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 4.7e-161 572.4 518 58.7
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 4.0e-136 489.6 372 72.6
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.5e-130 471.1 369 65.9
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 1.9e-125 454.1 332 73.5
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 3.7e-118 429.9 281 70.5
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 7.6e-95 352.4 228 71.5
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 7.4e-82 309.3 299 55.2
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 7.4e-82 309.3 676 33.7
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.0e-78 298.9 189 75.1
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 6.5e-78 296.2 176 80.7
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.1e-77 295.4 230 70.0
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 3.1e-72 277.3 198 76.8
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 2.9e-70 270.8 147 83.7
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.1e-64 252.3 146 71.2
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 1.4e-64 251.9 706 28.2
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 2.4e-64 251.1 598 31.6
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.0e-63 248.1 265 49.8
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.0e-51 209.1 593 31.7
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 4.0e-51 207.2 217 58.1
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 6.3e-49 199.9 217 55.3
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 1.5e-42 178.7 327 41.0
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 7.2e-37 159.8 183 51.9
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.2e-34 152.5 529 25.1
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 3.1e-32 144.4 87 82.8
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.5e-29 135.6 82 79.3
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.8e-27 128.6 88 75.0
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-26 125.9 138 53.6
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 4.9e-25 120.6 164 45.1
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.7e-22 112.1 57 89.5
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 9.8e-18 96.3 64 73.4
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 1.7e-14 85.5 58 72.4
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 2.3e-14 85.1 95 50.5
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 7.3e-13 80.1 55 69.1
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 7.5e-10 70.1 43 72.1
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 6.4e-09 67.0 80 47.5
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 1.9e-08 65.5 48 56.2


User provided reference genes

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