Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 1.3e-154 549.7 269 100.0
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 3.3e-142 508.4 268 91.0
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 3.6e-141 505.0 267 90.6
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 5.2e-140 501.1 269 89.6
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 4.9e-138 494.6 268 88.8
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 4.9e-138 494.6 269 87.7
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 6.4e-138 494.2 269 87.0
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 8.3e-138 493.8 269 88.1
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 8.3e-138 493.8 269 87.0
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 1.1e-137 493.4 269 87.7
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 3.2e-137 491.9 269 87.0
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 7.0e-137 490.7 269 87.0
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 9.2e-137 490.3 269 88.1
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.2e-136 490.0 269 86.6
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 2.7e-136 488.8 269 86.2
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 2.7e-136 488.8 270 87.0
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 5.9e-136 487.6 269 86.6
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 7.8e-136 487.3 263 87.8
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 1.0e-135 486.9 269 86.2
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 1.3e-135 486.5 269 86.2
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 2.3e-135 485.7 269 86.2
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.0e-135 485.3 269 85.9
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.9e-135 485.0 269 86.2
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.9e-135 485.0 269 85.5
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.9e-135 485.0 269 85.5
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 5.0e-135 484.6 269 85.9
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 5.0e-135 484.6 306 80.1
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 5.0e-135 484.6 269 85.9
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 1.1e-134 483.4 271 84.9
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.1e-134 483.4 269 85.5
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 1.5e-134 483.0 269 85.1
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.9e-134 482.6 271 85.2
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 2.5e-134 482.3 269 85.9
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 4.3e-134 481.5 269 85.1
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 5.6e-134 481.1 269 85.9
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 9.5e-134 480.3 271 85.2
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 2.1e-133 479.2 274 85.0
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 2.1e-133 479.2 269 84.0
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 4.7e-133 478.0 269 84.8
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 6.2e-133 477.6 269 85.1
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 6.2e-133 477.6 269 84.0
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 8.0e-133 477.2 266 85.3
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 8.0e-133 477.2 269 84.4
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 1.0e-132 476.9 270 85.9
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 1.0e-132 476.9 269 84.8
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 1.0e-132 476.9 269 84.0
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 1.4e-132 476.5 269 83.3
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-132 475.7 269 84.4
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 4.0e-132 474.9 269 84.8
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 1.2e-131 473.4 269 83.6
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.5e-131 473.0 269 84.0
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 1.5e-131 473.0 269 84.4
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 4.4e-131 471.5 269 83.3
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 5.8e-131 471.1 269 83.6
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 5.8e-131 471.1 269 84.0
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 7.5e-131 470.7 269 83.6
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 1.3e-130 469.9 269 84.0
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.7e-130 468.4 269 82.5
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 4.9e-130 468.0 270 83.3
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 8.3e-130 467.2 269 82.5
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.3e-130 467.2 269 82.5
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 2.4e-129 465.7 269 82.2
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.2e-129 463.8 269 83.3
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.6e-128 463.0 281 79.0
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.7e-128 462.2 275 81.1
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.7e-128 462.2 275 80.7
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 3.5e-128 461.8 269 82.2
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 4.6e-128 461.5 269 81.8
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.6e-128 461.5 269 81.0
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 7.8e-128 460.7 269 83.6
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.8e-128 460.7 275 80.7
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 3.0e-127 458.8 269 82.2
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 3.0e-127 458.8 268 81.7
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 6.6e-127 457.6 267 80.9
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 1.5e-126 456.4 269 79.9
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 2.5e-126 455.7 269 82.5
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 2.5e-126 455.7 271 82.3
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 4.3e-126 454.9 269 79.6
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 5.6e-126 454.5 269 79.9
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 2.1e-125 452.6 270 80.7
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 2.1e-125 452.6 269 79.9
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 2.1e-125 452.6 269 81.8
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 2.8e-125 452.2 269 79.2
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 4.7e-125 451.4 269 81.0
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 4.7e-125 451.4 267 80.9
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 6.2e-125 451.1 270 80.4
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 8.1e-125 450.7 252 87.7
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 8.1e-125 450.7 269 79.9
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 1.8e-124 449.5 269 79.2
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 4.0e-124 448.4 270 80.0
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 5.2e-124 448.0 268 79.9
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 6.8e-124 447.6 269 78.8
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 2.0e-123 446.0 269 80.7
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 2.6e-123 445.7 270 79.6
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 4.4e-123 444.9 269 78.1
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 7.5e-123 444.1 269 80.3
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.9e-122 442.2 275 79.3
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 8.3e-122 440.7 269 78.8
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 2.4e-121 439.1 269 79.9
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 4.1e-121 438.3 261 78.5
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 7.1e-121 437.6 269 78.4
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 3.5e-120 435.3 286 75.2
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 6.0e-120 434.5 269 79.6
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 7.8e-120 434.1 265 79.2
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 1.0e-119 433.7 244 85.7
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 1.7e-119 433.0 269 78.1
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 1.7e-119 433.0 269 78.8
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 3.9e-119 431.8 269 79.6
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-118 430.3 269 78.4
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 1.5e-118 429.9 269 77.7
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.9e-118 429.5 269 74.7
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 2.5e-118 429.1 267 77.2
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.6e-117 426.4 269 75.1
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 2.8e-117 425.6 269 74.3
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 1.4e-116 423.3 268 73.9
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.0e-116 421.8 269 77.0
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 5.2e-116 421.4 269 78.1
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 5.2e-116 421.4 268 72.8
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 8.9e-116 420.6 269 75.1
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 2.6e-115 419.1 266 74.4
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 2.9e-114 415.6 269 73.6
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.8e-114 415.2 276 73.6
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-113 413.3 276 73.6
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-113 413.3 270 74.8
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.9e-113 412.9 270 74.8
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.0e-112 407.9 276 72.8
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-111 407.1 271 72.7
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 5.1e-111 404.8 271 72.3
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.6e-111 404.1 271 72.3
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 3.3e-110 402.1 269 71.0
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 4.3e-110 401.7 269 71.7
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 1.4e-108 396.7 235 78.7
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.8e-108 396.4 270 69.3
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.4e-108 396.0 272 73.9
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 8.9e-108 394.0 267 70.4
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 2.6e-107 392.5 270 69.3
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 3.4e-107 392.1 270 71.1
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 5.8e-107 391.3 236 80.9
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 4.9e-106 388.3 270 70.7
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 6.4e-106 387.9 269 68.8
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.9e-105 386.3 271 70.8
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 4.2e-105 385.2 212 87.3
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 2.7e-104 382.5 271 67.5
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 6.0e-104 381.3 270 67.8
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 4.3e-102 375.2 271 68.3
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.4e-97 360.1 211 82.5
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 7.1e-97 357.8 249 68.3
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 6.7e-95 351.3 197 85.8
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 6.7e-95 351.3 217 79.7
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 1.1e-89 334.0 187 84.5
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-89 333.6 189 83.1
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 5.5e-89 331.6 295 57.3
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 4.3e-78 295.4 269 55.0
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.0e-62 243.4 181 68.0
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 3.3e-62 242.7 188 64.4
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 1.1e-60 237.7 143 79.7
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.1e-60 234.6 133 83.5
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 2.3e-55 219.9 136 76.5
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 3.0e-55 219.5 270 43.3
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 3.3e-54 216.1 188 62.8
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 3.8e-50 202.6 271 41.0
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 5.9e-43 178.7 269 42.0
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.3e-37 161.0 278 36.0
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 5.4e-36 155.6 88 84.1
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 9.1e-36 154.8 82 90.2
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 1.6e-35 154.1 129 64.3
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 5.5e-33 145.6 109 67.0
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 8.8e-31 138.3 77 83.1
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 5.0e-26 122.5 68 83.8
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.2e-24 117.9 69 78.3
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 1.6e-24 117.5 108 56.5
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 3.4e-22 109.8 67 68.7
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.1e-17 94.7 68 66.2
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 5.2e-15 85.9 49 77.6
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 5.2e-15 85.9 49 77.6
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 6.8e-15 85.5 60 65.0
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 9.8e-14 81.6 65 61.5
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 1.2e-11 74.7 57 64.9
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 2.0e-11 73.9 57 63.2
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 7.3e-09 65.5 51 62.7
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.7e-08 62.8 44 63.6


User provided reference genes

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