Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.1e-306 1055.8 540 100.0
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 3.0e-264 914.8 540 85.6
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 4.0e-264 914.4 540 85.4
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 2.9e-259 898.3 539 84.4
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 1.5e-234 816.2 542 75.6
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 5.6e-234 814.3 539 75.9
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.1e-232 808.5 542 75.5
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.1e-232 808.5 542 75.5
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.4e-230 800.8 542 74.5
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 9.2e-229 797.0 542 73.4
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 2.7e-228 795.4 540 74.1
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 8.1e-225 783.9 542 74.0
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 3.4e-223 778.5 540 74.6
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 5.8e-223 777.7 540 72.0
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 2.2e-222 775.8 540 74.4
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 2.9e-222 775.4 540 73.5
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 4.1e-221 771.5 540 71.9
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.2e-220 770.0 539 72.2
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 3.5e-220 768.5 547 71.1
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 1.0e-219 766.9 541 69.9
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.3e-219 766.5 547 70.9
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 3.0e-219 765.4 542 71.6
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 3.9e-219 765.0 585 68.5
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 8.6e-219 763.8 541 73.0
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 5.6e-218 761.1 584 67.8
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 7.3e-218 760.8 540 70.9
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.1e-217 759.2 538 71.2
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 2.1e-217 759.2 540 71.5
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.6e-217 758.4 540 71.1
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 1.1e-216 756.9 583 67.4
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 8.9e-216 753.8 538 69.7
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 1.2e-215 753.4 541 70.2
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 5.8e-215 751.1 542 69.7
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 1.3e-214 750.0 540 70.9
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 2.9e-214 748.8 541 69.7
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 8.4e-214 747.3 540 70.9
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 4.1e-213 745.0 540 70.0
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.6e-212 743.0 541 69.3
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.6e-212 743.0 542 69.4
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.7e-212 742.3 540 71.5
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 4.6e-212 741.5 540 70.2
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.7e-211 739.6 542 69.0
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 3.9e-211 738.4 531 69.3
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.5e-210 736.5 540 70.0
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 5.6e-210 734.6 540 69.4
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 1.1e-208 730.3 536 69.0
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.6e-207 725.7 543 68.5
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 1.7e-206 723.0 540 69.1
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.1e-205 720.3 546 67.8
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-205 719.5 546 67.9
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 7.1e-205 717.6 540 67.8
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 1.6e-204 716.5 540 66.9
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.1e-204 716.1 585 65.5
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.1e-204 716.1 585 65.5
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 3.5e-204 715.3 539 67.2
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.3e-203 712.6 584 64.6
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.0e-203 712.2 585 65.1
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.3e-202 708.4 584 63.9
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 9.6e-202 707.2 542 66.6
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 2.8e-201 705.7 540 66.5
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 1.1e-200 703.7 542 64.9
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 4.0e-200 701.8 548 66.6
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 4.0e-200 701.8 539 66.6
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 4.5e-199 698.4 539 66.2
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 7.6e-199 697.6 525 68.4
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.8e-198 695.3 585 63.2
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.4e-197 693.3 539 65.9
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 4.2e-197 691.8 526 67.3
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 7.1e-197 691.0 525 67.0
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 2.1e-196 689.5 540 66.3
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 4.6e-196 688.3 544 64.9
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.5e-194 683.3 541 65.6
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 4.3e-194 681.8 541 65.2
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 4.8e-193 678.3 541 64.3
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 3.4e-191 672.2 543 62.8
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 6.4e-190 667.9 539 62.9
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.2e-189 665.2 513 66.3
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 5.5e-189 664.8 543 62.8
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 7.9e-188 661.0 529 65.4
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 1.3e-187 660.2 544 60.8
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.8e-187 659.8 543 63.0
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.1e-186 657.1 535 63.4
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.5e-186 656.8 542 62.7
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 3.3e-186 655.6 542 61.6
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 5.6e-186 654.8 542 61.6
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.3e-185 653.7 543 61.5
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 1.4e-184 650.2 543 61.3
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 1.8e-184 649.8 543 61.3
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 4.9e-182 641.7 535 62.6
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.4e-181 640.2 549 60.1
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 3.5e-180 635.6 414 76.8
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 6.0e-180 634.8 571 61.1
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 6.7e-179 631.3 543 61.1
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 8.7e-179 630.9 549 62.3
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 5.7e-178 628.2 534 62.7
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 5.3e-176 621.7 543 59.7
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 3.6e-172 609.0 538 58.2
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 2.3e-171 606.3 534 59.4
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.0e-163 580.9 552 57.6
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.3e-162 575.9 552 58.3
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 2.6e-154 549.7 418 66.5
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 5.2e-147 525.4 426 63.8
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.7e-145 520.4 417 62.8
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 2.7e-135 486.5 498 52.4
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 4.7e-132 475.7 545 48.4
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 1.1e-128 464.5 319 71.5
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.4e-128 464.2 362 64.4
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 1.8e-123 447.2 492 51.8
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 5.2e-123 445.7 570 42.5
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 4.4e-122 442.6 543 48.6
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 5.8e-122 442.2 424 58.0
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 8.3e-121 438.3 469 52.5
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.0e-110 404.8 353 58.9
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 7.1e-104 382.1 423 51.5
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.5e-101 374.4 502 41.4
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.8e-99 367.5 316 59.8
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 8.9e-99 365.2 347 57.3
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 5.8e-98 362.5 502 41.6
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 9.2e-96 355.1 514 39.9
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.1e-95 354.0 264 67.8
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.8e-91 340.9 505 41.8
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 5.3e-91 339.3 505 41.8
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.9e-88 330.9 488 39.1
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 2.9e-81 307.0 273 60.4
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-69 267.7 204 67.2
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 5.6e-69 266.2 328 49.7
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.4e-56 224.9 195 57.9
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.3e-44 185.3 111 86.5
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 2.4e-43 181.0 206 52.4
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.5e-42 178.3 120 74.2
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 1.6e-39 168.3 170 55.9
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.8e-36 157.5 105 74.3
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 4.5e-34 150.2 113 68.1
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 6.5e-33 146.4 586 24.2
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 2.1e-31 141.4 97 72.2
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.1e-31 141.4 104 68.3
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 4.7e-31 140.2 527 28.3
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 4.0e-30 137.1 460 28.9
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.2e-29 135.6 114 61.4
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 2.2e-28 131.3 88 70.5
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 5.3e-27 126.7 91 69.2
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.0e-25 122.5 499 26.5
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 1.6e-23 115.2 88 68.2
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.3e-17 94.7 287 30.0
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.3e-14 84.7 85 48.2
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 5.7e-13 80.1 123 43.1
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 3.2e-11 74.3 83 53.0
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.1e-11 73.9 126 41.3
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 1.3e-09 68.9 454 22.5
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 9.5e-08 62.8 97 37.1


User provided reference genes

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