Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G060500 Carya illinoinensis HOM05D003351 ORTHO05D003806 4.3e-49 197.6 95 100.0
CiPaw.01G060600 Carya illinoinensis HOM05D003351 ORTHO05D003806 9.7e-33 143.3 87 80.5
Haze_15493 Corylus avellana HOM05D003351 ORTHO05D003806 4.8e-32 141.0 84 83.3
QL08p048978 Quercus lobata HOM05D003351 ORTHO05D003806 5.0e-29 131.0 86 73.3
FAN01G2146 Fragaria x ananassa HOM05D003351 ORTHO05D003806 1.5e-28 129.4 86 70.9
Nn6g33439 Nelumbo nucifera HOM05D003351 ORTHO05D003806 1.5e-28 129.4 86 74.4
FAN10G4309 Fragaria x ananassa HOM05D003351 ORTHO05D003806 1.9e-28 129.0 86 70.9
GSVIVG01026913001 Vitis vinifera HOM05D003351 ORTHO05D003806 1.9e-28 129.0 86 70.9
MD01G1058600 Malus domestica HOM05D003351 ORTHO05D003806 2.5e-28 128.6 86 70.9
Prupe.2G169700 Prunus persica HOM05D003351 ORTHO05D003806 2.5e-28 128.6 86 68.6
FvH4_7g14192 Fragaria vesca HOM05D003351 ORTHO05D003806 3.2e-28 128.3 86 70.9
FAN06G3044 Fragaria x ananassa HOM05D003351 ORTHO05D003806 3.2e-28 128.3 86 70.9
QL08p048955 Quercus lobata HOM05D003351 ORTHO05D003806 5.5e-28 127.5 86 72.1
RcHm_v2.0_Chr1g0355121 Rosa chinensis HOM05D003351 ORTHO05D003806 7.2e-28 127.1 86 69.8
CANSAT56G4221 Cannabis sativa HOM05D003351 ORTHO05D003806 1.6e-27 125.9 91 64.8
TWI59G0062 Tripterygium wilfordii HOM05D003351 ORTHO05D003806 2.7e-27 125.2 92 67.4
CSS0020727 Camellia sinensis var. sinensis HOM05D003351 ORTHO05D003806 1.4e-26 122.9 92 64.1
Lj9A583T62 Lonicera japonica HOM05D003351 ORTHO05D003806 1.8e-26 122.5 86 67.4
ClCG05G001560 Citrullus lanatus HOM05D003351 ORTHO05D003806 5.2e-26 120.9 86 68.6
Sed0024794 Sechium edule HOM05D003351 ORTHO05D003806 6.7e-26 120.6 86 62.8
Solyc01g094530.4 Solanum lycopersicum HOM05D003351 ORTHO05D003806 6.7e-26 120.6 94 61.7
PGSC0003DMG400000166 Solanum tuberosum HOM05D003351 ORTHO05D003806 6.7e-26 120.6 94 60.6
MD01G1058500 Malus domestica HOM05D003351 ORTHO05D003806 8.8e-26 120.2 86 66.3
Sopen01g038340 Solanum pennellii HOM05D003351 ORTHO05D003806 8.8e-26 120.2 94 61.7
FAN06G4684 Fragaria x ananassa HOM05D003351 ORTHO05D003806 1.2e-25 119.8 94 64.9
Glyma.18G232000 Glycine max HOM05D003351 ORTHO05D003806 1.5e-25 119.4 86 64.0
arahy.Tifrunner.gnm1.ann1.74NP28 Arachis hypogaea HOM05D003351 ORTHO05D003806 2.0e-25 119.0 86 64.0
arahy.Tifrunner.gnm1.ann1.CI504D Arachis hypogaea HOM05D003351 ORTHO05D003806 2.0e-25 119.0 86 64.0
CDE11G0862 Ceratophyllum demersum HOM05D003351 ORTHO05D003806 2.6e-25 118.6 85 69.4
Cc02_g37920 Coffea canephora HOM05D003351 ORTHO05D003806 2.6e-25 118.6 86 67.4
SalBow5G0930 Salvia bowleyana HOM05D003351 ORTHO05D003806 2.6e-25 118.6 86 64.0
SalBow5G3927 Salvia bowleyana HOM05D003351 ORTHO05D003806 2.6e-25 118.6 86 64.0
Glyma.09G260200 Glycine max HOM05D003351 ORTHO05D003806 4.4e-25 117.9 86 62.8
Ciclev10020242m.g Citrus clementina HOM05D003351 ORTHO05D003806 7.5e-25 117.1 88 63.6
MELO3C006113.2 Cucumis melo HOM05D003351 ORTHO05D003806 7.5e-25 117.1 85 65.9
CsaV3_3G008950 Cucumis sativus L. HOM05D003351 ORTHO05D003806 7.5e-25 117.1 85 65.9
Migut.N01442 Erythranthe guttata HOM05D003351 ORTHO05D003806 7.5e-25 117.1 90 66.7
Sed0019127 Sechium edule HOM05D003351 ORTHO05D003806 7.5e-25 117.1 86 61.6
ECA236G4888 Erigeron canadensis HOM05D003351 ORTHO05D003806 1.3e-24 116.3 82 69.5
Glyma.18G232300 Glycine max HOM05D003351 ORTHO05D003806 1.3e-24 116.3 86 62.8
Lj1g0000541 Lotus japonicus HOM05D003351 ORTHO05D003806 1.3e-24 116.3 86 64.0
COL.COLO4_12706 Corchorus olitorius HOM05D003351 ORTHO05D003806 1.7e-24 115.9 85 63.5
DCAR_025188 Daucus carota HOM05D003351 ORTHO05D003806 1.7e-24 115.9 85 65.9
Lj3g0018331 Lotus japonicus HOM05D003351 ORTHO05D003806 1.7e-24 115.9 93 55.9
Medtr7g077400 Medicago truncatula HOM05D003351 ORTHO05D003806 2.2e-24 115.5 86 62.8
MSTRG.4857 Avicennia marina HOM05D003351 ORTHO05D003806 2.8e-24 115.2 86 62.8
Lsat_1_v5_gn_7_4420 Lactuca sativa HOM05D003351 ORTHO05D003806 2.8e-24 115.2 89 64.0
Manes.05G035200 Manihot esculenta HOM05D003351 ORTHO05D003806 2.8e-24 115.2 85 63.5
Thecc.01G360000 Theobroma cacao HOM05D003351 ORTHO05D003806 2.8e-24 115.2 85 64.7
Solyc01g094550.3 Solanum lycopersicum HOM05D003351 ORTHO05D003806 3.7e-24 114.8 86 62.8
Sopen01g038360 Solanum pennellii HOM05D003351 ORTHO05D003806 3.7e-24 114.8 86 62.8
Potri.014G083300 Populus trichocarpa HOM05D003351 ORTHO05D003806 6.3e-24 114.0 93 60.2
arahy.Tifrunner.gnm1.ann1.M409IX Arachis hypogaea HOM05D000404 ORTHO05D002003 8.2e-24 113.6 83 63.9
Dinv43809 Davidia involucrata HOM05D003351 ORTHO05D003806 8.2e-24 113.6 86 64.0
Psat0s3577g0160 Pisum sativum HOM05D003351 ORTHO05D003806 8.2e-24 113.6 86 59.3
Duzib133G0362 Durio zibethinus HOM05D003351 ORTHO05D003806 1.1e-23 113.2 91 59.3
Glyma.03G009800 Glycine max HOM05D003351 ORTHO05D003806 1.4e-23 112.8 86 62.8
Lalb_Chr17g0339681 Lupinus albus HOM05D003351 ORTHO05D003806 1.4e-23 112.8 85 61.2
vmacro23203 Vaccinium macrocarpon HOM05D003351 ORTHO05D003806 1.4e-23 112.8 92 63.0
Atru.chr5.459 Acer truncatum HOM05D003351 ORTHO05D003806 1.8e-23 112.5 86 61.6
arahy.Tifrunner.gnm1.ann1.UANN5Y Arachis hypogaea HOM05D003351 ORTHO05D003806 1.8e-23 112.5 83 62.7
Ca_23637_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 2.4e-23 112.1 83 61.4
SGA_v2.0_scaffold43G16419 Striga asiatica HOM05D003351 ORTHO05D003806 2.4e-23 112.1 89 59.6
TPR.G37800 Trifolium pratense HOM05D003351 ORTHO05D003806 2.4e-23 112.1 88 59.1
DCAR_015970 Daucus carota HOM05D003351 ORTHO05D003806 4.1e-23 111.3 85 65.9
Phvul.008G065700 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 4.1e-23 111.3 86 61.6
AUR62004348 Chenopodium quinoa HOM05D003351 ORTHO05D003806 7.0e-23 110.5 85 67.1
Psat0s3577g0120 Pisum sativum HOM05D003351 ORTHO05D003806 7.0e-23 110.5 86 58.1
Actinidia33422 Actinidia chinensis HOM05D003351 ORTHO05D003806 9.1e-23 110.2 92 60.9
Psat4g154520 Pisum sativum HOM05D003351 ORTHO05D003806 9.1e-23 110.2 82 61.0
Gohir.D11G092700 Gossypium hirsutum HOM05D003351 ORTHO05D003806 1.2e-22 109.8 88 58.0
HanXRQChr06g0170081 Helianthus annuus HOM05D003351 ORTHO05D003806 1.6e-22 109.4 90 61.1
Lj7A514T27 Lonicera japonica HOM05D003351 ORTHO05D003806 1.6e-22 109.4 92 58.7
TPR.G14856 Trifolium pratense HOM05D003351 ORTHO05D003806 1.6e-22 109.4 82 59.8
ATR0680G356 Amborella trichopoda HOM05D003351 ORTHO05D003806 2.0e-22 109.0 86 60.5
Manes.01G257800 Manihot esculenta HOM05D003351 ORTHO05D003806 2.0e-22 109.0 84 61.9
Sabra14G0060600 Salix brachista HOM05D003351 ORTHO05D003806 2.7e-22 108.6 85 58.8
Nitab4.5_0005277g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 3.5e-22 108.2 84 61.9
Gohir.A11G088400 Gossypium hirsutum HOM05D003351 ORTHO05D003806 4.5e-22 107.8 88 58.0
Medtr8g030920 Medicago truncatula HOM05D003351 ORTHO05D003806 4.5e-22 107.8 82 59.8
TPR.G40156 Trifolium pratense HOM05D003351 ORTHO05D003806 5.9e-22 107.5 91 54.9
EL10Ac1g00424 Beta vulgaris HOM05D003351 ORTHO05D003806 7.7e-22 107.1 85 64.7
Ca_27001_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 7.7e-22 107.1 86 59.3
HanXRQChr04g0121471 Helianthus annuus HOM05D003351 ORTHO05D003806 7.7e-22 107.1 83 63.9
PSO782G5283 Papaver somniferum HOM05D003351 ORTHO05D003806 7.7e-22 107.1 91 59.3
Duzib138G1725 Durio zibethinus HOM05D003351 ORTHO05D003806 1.0e-21 106.7 82 62.2
Gorai.007G099000 Gossypium raimondii HOM05D003351 ORTHO05D003806 1.3e-21 106.3 84 59.5
Lalb_Chr19g0126951 Lupinus albus HOM05D003351 ORTHO05D003806 1.3e-21 106.3 86 58.1
Aqoxy7G00326 Aquilegia oxysepala HOM05D003351 ORTHO05D003806 2.2e-21 105.5 87 59.8
PSO478G5134 Papaver somniferum HOM05D003351 ORTHO05D003806 2.2e-21 105.5 86 61.6
Glyma.07G071300 Glycine max HOM05D003351 ORTHO05D003806 2.9e-21 105.1 86 60.5
THA.LOC104814102 Tarenaya hassleriana HOM05D003351 ORTHO05D003806 5.0e-21 104.4 86 62.8
HPP92_008506 Vanilla planifolia HOM05D003351 ORTHO05D003806 5.0e-21 104.4 86 59.3
Phvul.010G098200 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 6.5e-21 104.0 86 59.3
Eucgr.E00141 Eucalyptus grandis HOM05D003351 ORTHO05D003806 1.9e-20 102.4 86 57.0
Sc23g0002940 Simmondsia chinensis HOM05D003351 ORTHO05D003806 1.9e-20 102.4 85 58.8
VMungo0331G1844 Vigna mungo HOM05D003351 ORTHO05D003806 1.9e-20 102.4 86 59.3
Psat0s3832g0080 Pisum sativum HOM05D003351 ORTHO05D003806 2.5e-20 102.1 85 57.6
Aa31LG1G11070 Aethionema arabicum HOM05D003351 ORTHO05D003806 3.2e-20 101.7 86 60.5
Ah.05g180660 Amaranthus hybridus HOM05D003351 ORTHO05D003806 3.2e-20 101.7 85 62.4
Hund16926 Selenicereus undatus HOM05D003351 ORTHO05D003806 5.5e-20 100.9 86 59.3
SEGI_17243 Sequoiadendron giganteum HOM05D003351 ORTHO05D003806 1.2e-19 99.8 83 59.0
Lalb_Chr19g0126941 Lupinus albus HOM05D003351 ORTHO05D003806 1.6e-19 99.4 81 55.6
PSO478G3804 Papaver somniferum HOM05D003351 ORTHO05D003806 2.1e-19 99.0 89 58.4
PSO782G0254 Papaver somniferum HOM05D003351 ORTHO05D003806 6.1e-19 97.4 89 57.3
AL6G52960 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 8.0e-19 97.1 95 54.7
BraA10t42310Z Brassica rapa HOM05D003351 ORTHO05D003806 1.0e-18 96.7 86 55.8
Thhalv10007689m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 1.0e-18 96.7 86 55.8
AT1G01710 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 4.0e-18 94.7 85 56.5
AL1G10650 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 5.2e-18 94.4 85 55.3
Aa31LG5G470 Aethionema arabicum HOM05D003351 ORTHO05D003806 6.8e-18 94.0 85 56.5
BolC5t28825H Brassica oleracea HOM05D003351 ORTHO05D003806 6.8e-18 94.0 82 57.3
Carub.0001s0050 Capsella rubella HOM05D003351 ORTHO05D003806 6.8e-18 94.0 81 58.0
CARHR248670 Cardamine hirsuta HOM05D003351 ORTHO05D003806 8.8e-18 93.6 86 52.3
PSO478G2412 Papaver somniferum HOM05D003351 ORTHO05D003806 1.2e-17 93.2 87 54.0
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.5e-17 92.8 81 58.0
Sp1g00600 Schrenkiella parvula HOM05D003351 ORTHO05D003806 1.5e-17 92.8 86 53.5
Thhalv10029128m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 2.0e-17 92.4 85 54.1
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 4.4e-17 91.3 81 56.8
Os04g0558400 Oryza sativa ssp. japonica HOM05D003351 ORTHO05D003806 4.4e-17 91.3 86 52.3
Aa31LG5G460 Aethionema arabicum HOM05D003351 ORTHO05D003806 4.8e-16 87.8 81 55.6
Sp6g00550 Schrenkiella parvula HOM05D003351 ORTHO05D003806 1.8e-15 85.9 85 52.9
Lsat_1_v5_gn_7_4460 Lactuca sativa HOM05D003351 ORTHO05D003806 3.1e-15 85.1 84 52.4
PSO063G6511 Papaver somniferum HOM05D003351 ORTHO05D003806 7.0e-15 84.0 89 51.7
Hund27282 Selenicereus undatus HOM05D003351 ORTHO05D003806 1.6e-14 82.8 84 50.0
PSO782G2636 Papaver somniferum HOM05D003351 ORTHO05D003806 3.5e-14 81.6 79 51.9
HanXRQChr06g0170071 Helianthus annuus HOM05D003351 ORTHO05D003806 4.5e-14 81.3 84 51.2
A03p32150 Brassica napus HOM05D003351 ORTHO05D003806 1.0e-13 80.1 85 47.1
DCAR_006927 Daucus carota HOM05D003351 ORTHO05D003806 1.0e-13 80.1 85 52.9
BcaC01g06871 Brassica carinata HOM05D003351 ORTHO05D003806 3.8e-13 78.2 85 45.9
BolC3t16188H Brassica oleracea HOM05D003351 ORTHO05D003806 3.8e-13 78.2 85 45.9
BraA03t12385Z Brassica rapa HOM05D003351 ORTHO05D003806 3.8e-13 78.2 85 47.1
Pp3c14_7450 Physcomitrium patens HOM05D003351 ORTHO05D003806 8.6e-13 77.0 81 50.6
BcaB01g02197 Brassica carinata HOM05D003351 ORTHO05D003806 1.1e-12 76.6 84 51.2
BcaNung05354 Brassica carinata HOM05D003351 ORTHO05D003806 1.9e-12 75.9 85 48.2
BcaC03g16040 Brassica carinata HOM05D003351 ORTHO05D003806 4.2e-12 74.7 84 50.0
BolC2t09816H Brassica oleracea HOM05D003351 ORTHO05D003806 5.5e-12 74.3 84 48.8
C02p38000 Brassica napus HOM05D003351 ORTHO05D003806 9.5e-12 73.6 81 50.6
C03p39170 Brassica napus HOM05D003351 ORTHO05D003806 9.5e-12 73.6 81 46.9
BraA02t07405Z Brassica rapa HOM05D003351 ORTHO05D003806 2.1e-11 72.4 84 48.8
Peaxi162Scf00020g00237 Petunia axillaris HOM05D003351 ORTHO05D003806 1.0e-10 70.1 50 60.0
BcaC04g24162 Brassica carinata HOM05D003351 ORTHO05D003806 1.8e-10 69.3 86 43.0
CAN.G78.59 Capsicum annuum HOM05D003351 ORTHO05D003806 4.0e-10 68.2 50 56.0
SMO147G0381 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 6.8e-10 67.4 85 43.5
Rhsim13G0014400 Rhododendron simsii HOM05D003351 ORTHO05D003806 2.0e-09 65.9 52 61.5
Pp3c12_25760 Physcomitrium patens HOM05D003351 ORTHO05D003806 2.6e-09 65.5 85 37.6
BcaB01g02160 Brassica carinata HOM05D003351 ORTHO05D003806 3.7e-08 61.6 86 40.7
AUR62022554 Chenopodium quinoa HOM05D003351 ORTHO05D003806 3.7e-08 61.6 49 59.2
HanXRQChr04g0121591 Helianthus annuus HOM05D003351 ORTHO05D003806 4.9e-08 61.2 46 58.7
Mapoly0016s0008 Marchantia polymorpha HOM05D003351 ORTHO05D003806 8.3e-08 60.5 85 38.8
Pp3c10_19190 Physcomitrium patens HOM05D003351 ORTHO05D003806 3.1e-07 58.5 86 36.0


User provided reference genes

Program Settings