Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 1.6e-36 155.6 80 100.0
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 3.7e-25 117.9 81 74.1
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 1.4e-24 115.9 80 71.2
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 5.3e-24 114.0 80 70.0
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 1.7e-22 109.0 80 70.0
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 1.7e-22 109.0 78 65.4
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 2.2e-22 108.6 78 65.4
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 5.0e-22 107.5 80 70.0
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 1.1e-21 106.3 79 67.1
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 1.4e-21 105.9 79 67.1
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.4e-21 105.9 79 67.1
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.4e-21 105.9 79 67.1
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.4e-21 105.9 79 67.1
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 2.5e-21 105.1 79 67.1
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 3.2e-21 104.8 79 64.6
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 3.2e-21 104.8 75 72.0
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 5.5e-21 104.0 80 65.0
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 5.5e-21 104.0 80 66.2
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 5.5e-21 104.0 80 63.8
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 5.5e-21 104.0 80 66.2
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 5.5e-21 104.0 77 66.2
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 7.2e-21 103.6 79 64.6
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 7.2e-21 103.6 79 69.6
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 7.2e-21 103.6 79 64.6
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.2e-20 102.8 80 65.0
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 1.2e-20 102.8 79 64.6
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 1.2e-20 102.8 82 64.6
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.6e-20 102.4 78 65.4
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 1.6e-20 102.4 79 63.3
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 2.7e-20 101.7 80 63.8
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 4.7e-20 100.9 80 65.0
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 6.1e-20 100.5 80 63.8
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 6.1e-20 100.5 80 62.5
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 1.4e-19 99.4 80 61.2
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 1.8e-19 99.0 79 63.3
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 2.3e-19 98.6 66 72.7
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 6.7e-19 97.1 79 62.0
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 6.7e-19 97.1 77 63.6
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 8.8e-19 96.7 59 79.7
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.5e-18 95.9 79 62.0
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 3.3e-18 94.7 79 62.0
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 5.7e-18 94.0 61 75.4
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 7.4e-18 93.6 79 62.0
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 1.3e-17 92.8 60 73.3
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 1.3e-17 92.8 61 72.1
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 1.7e-17 92.4 59 74.6
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 1.7e-17 92.4 67 64.2
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 2.2e-17 92.0 79 62.0
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 2.8e-17 91.7 65 67.7
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 2.8e-17 91.7 74 60.8
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 4.8e-17 90.9 85 58.8
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 8.2e-17 90.1 80 60.0
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 8.2e-17 90.1 77 58.4
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 1.1e-16 89.7 79 54.4
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 1.4e-16 89.4 77 58.4
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 1.8e-16 89.0 77 54.5
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 2.4e-16 88.6 64 67.2
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 3.1e-16 88.2 75 56.0
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 4.1e-16 87.8 69 63.8
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 4.1e-16 87.8 115 46.1
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 5.3e-16 87.4 60 68.3
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 9.1e-16 86.7 76 56.6
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 1.2e-15 86.3 80 57.5
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.2e-15 86.3 81 56.8
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.0e-15 85.5 109 48.6
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 3.5e-15 84.7 63 66.7
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 4.5e-15 84.3 151 41.1
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 1.3e-14 82.8 75 52.0
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 1.3e-14 82.8 59 69.5
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 1.3e-14 82.8 64 65.6
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.7e-14 82.4 65 60.0
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 1.7e-14 82.4 77 54.5
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 2.2e-14 82.0 64 59.4
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 2.2e-14 82.0 65 63.1
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 6.5e-14 80.5 61 65.6
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 8.5e-14 80.1 60 65.0
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 1.1e-13 79.7 59 66.1
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 1.1e-13 79.7 59 66.1
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 1.1e-13 79.7 59 66.1
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 1.1e-13 79.7 59 66.1
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 1.1e-13 79.7 53 73.6
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 1.9e-13 79.0 53 71.7
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 4.2e-13 77.8 82 51.2
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 1.2e-12 76.3 83 50.6
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 1.6e-12 75.9 135 39.3
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 3.6e-12 74.7 61 60.7
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 8.0e-12 73.6 65 61.5
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 1.0e-11 73.2 67 55.2
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 5.2e-11 70.9 57 59.6
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 6.7e-11 70.5 62 59.7
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.1e-10 69.7 62 59.7
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 5.7e-10 67.4 49 63.3
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.7e-09 65.9 41 78.0
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 2.4e-08 62.0 38 76.3
Glyma.07G072000 Glycine max HOM05D007705 ORTHO05D009720 6.5e-06 53.9 35 71.4


User provided reference genes

Program Settings