Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 4.8e-47 190.7 86 100.0
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 2.5e-43 178.3 86 93.0
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 4.7e-42 174.1 86 90.7
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 7.9e-42 173.3 86 90.7
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.0e-41 172.9 86 90.7
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 3.9e-41 171.0 86 87.2
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 5.1e-41 170.6 85 90.6
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 2.6e-40 168.3 84 89.3
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 4.4e-40 167.5 84 88.1
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 5.7e-40 167.2 85 88.2
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 9.7e-40 166.4 88 88.6
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 2.2e-39 165.2 88 87.5
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.8e-39 164.9 84 88.1
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 3.7e-39 164.5 84 83.3
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 4.8e-39 164.1 85 88.2
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 8.2e-39 163.3 89 82.0
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 8.2e-39 163.3 84 86.9
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 8.2e-39 163.3 85 84.7
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 1.1e-38 162.9 84 85.7
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.8e-38 162.2 89 84.3
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 2.4e-38 161.8 84 85.7
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 2.4e-38 161.8 84 85.7
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 1.2e-37 159.5 85 82.4
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.2e-37 159.5 87 82.8
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 1.5e-37 159.1 85 84.7
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.6e-37 158.3 87 82.8
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.6e-37 158.3 81 85.2
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 2.6e-37 158.3 86 83.7
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.6e-37 158.3 86 82.6
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.6e-37 158.3 86 82.6
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 2.6e-37 158.3 86 81.4
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 3.5e-37 157.9 84 82.1
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 3.5e-37 157.9 89 80.9
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.5e-37 157.5 83 83.1
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.5e-37 157.5 83 83.1
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.5e-37 157.5 83 83.1
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.9e-37 157.1 84 82.1
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 5.9e-37 157.1 86 79.1
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 5.9e-37 157.1 85 84.7
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 7.7e-37 156.8 84 81.0
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.0e-36 156.4 85 82.4
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 1.3e-36 156.0 86 81.4
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 2.2e-36 155.2 86 81.4
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 6.5e-36 153.7 89 77.5
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 6.5e-36 153.7 86 79.1
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 6.5e-36 153.7 86 79.1
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 6.5e-36 153.7 86 79.1
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 8.5e-36 153.3 84 82.1
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 8.5e-36 153.3 84 82.1
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 8.5e-36 153.3 82 84.1
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 8.5e-36 153.3 87 81.6
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 8.5e-36 153.3 84 83.3
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 8.5e-36 153.3 84 81.0
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 8.5e-36 153.3 87 81.6
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.1e-35 152.9 83 83.1
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.1e-35 152.9 90 80.0
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 1.4e-35 152.5 82 84.1
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 1.4e-35 152.5 82 82.9
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 1.4e-35 152.5 82 82.9
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 1.9e-35 152.1 85 81.2
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.9e-35 152.1 84 83.3
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.9e-35 152.1 84 82.1
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 2.5e-35 151.8 82 82.9
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 2.5e-35 151.8 82 82.9
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 2.5e-35 151.8 82 81.7
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 2.5e-35 151.8 84 81.0
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 3.2e-35 151.4 85 81.2
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 4.2e-35 151.0 78 82.1
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 7.2e-35 150.2 86 75.6
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 9.4e-35 149.8 86 81.4
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 9.4e-35 149.8 86 81.4
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 9.4e-35 149.8 84 78.6
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 1.2e-34 149.4 86 77.9
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 1.2e-34 149.4 86 80.2
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 1.6e-34 149.1 86 76.7
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.6e-34 149.1 90 74.4
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.7e-34 147.5 84 82.1
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 4.7e-34 147.5 86 75.6
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 4.7e-34 147.5 87 80.5
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 6.1e-34 147.1 84 76.2
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 8.0e-34 146.7 82 80.5
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 8.0e-34 146.7 82 80.5
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 8.0e-34 146.7 84 82.1
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.0e-33 146.4 82 81.7
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 1.4e-33 146.0 84 78.6
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 1.4e-33 146.0 83 84.3
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 1.8e-33 145.6 84 71.4
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 3.9e-33 144.4 84 81.0
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 5.2e-33 144.1 84 81.0
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 6.7e-33 143.7 84 79.8
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 6.7e-33 143.7 84 79.8
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 6.7e-33 143.7 84 77.4
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 8.8e-33 143.3 90 76.7
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 1.5e-32 142.5 70 87.1
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 2.6e-32 141.7 84 77.4
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 2.6e-32 141.7 84 77.4
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 2.6e-32 141.7 82 80.5
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 3.3e-32 141.4 85 76.5
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 3.3e-32 141.4 86 70.9
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.3e-32 141.4 86 76.7
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 2.2e-31 138.7 84 76.2
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 2.8e-31 138.3 84 75.0
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 4.8e-31 137.5 80 78.8
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 8.2e-31 136.7 81 72.8
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 4.1e-30 134.4 83 69.9
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 5.3e-30 134.0 86 68.6
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 5.9e-29 130.6 102 63.7
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 5.0e-28 127.5 72 75.0
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 6.5e-28 127.1 63 88.9
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 1.1e-27 126.3 157 46.5
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 3.6e-26 121.3 63 84.1
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 4.7e-26 120.9 63 88.9
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 9.7e-24 113.2 62 83.9
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 9.7e-24 113.2 62 85.5
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 8.3e-23 110.2 60 81.7
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.4e-22 109.4 82 59.8
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 5.3e-22 107.5 62 80.6
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 2.7e-21 105.1 61 82.0
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.5e-21 104.8 59 76.3
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.5e-21 104.8 58 77.6
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 3.5e-21 104.8 62 77.4
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 4.5e-21 104.4 60 81.7
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 7.7e-21 103.6 62 74.2
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 7.7e-21 103.6 61 77.0
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.7e-20 102.4 58 77.6
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 1.7e-20 102.4 79 57.0
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 5.0e-20 100.9 59 79.7
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 6.5e-20 100.5 62 74.2
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 8.5e-20 100.1 62 74.2
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 4.2e-19 97.8 59 78.0
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 4.2e-19 97.8 59 78.0
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 1.6e-18 95.9 58 81.0
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.1e-18 95.5 66 69.7
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.7e-18 95.1 62 74.2
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 4.7e-18 94.4 61 63.9
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 6.1e-18 94.0 52 80.8
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 8.0e-18 93.6 61 77.0
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 2.3e-17 92.0 60 66.7
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 3.0e-17 91.7 54 79.6
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 4.0e-17 91.3 61 72.1
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 9.8e-16 86.7 62 69.4
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 1.3e-12 76.3 65 52.3
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 6.6e-12 73.9 39 82.1
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 1.5e-11 72.8 76 48.7
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 4.2e-11 71.2 62 51.6


User provided reference genes

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