Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G053500 Carya illinoinensis HOM05D007580 ORTHO05D009620 9.9e-71 270.0 137 100.0
CiPaw.01G052900 Carya illinoinensis HOM05D007580 ORTHO05D009620 1.5e-47 193.0 140 76.4
Cfa004181 Carpinus fangiana HOM05D007580 ORTHO05D009620 5.7e-42 174.5 158 64.6
Haze_15227 Corylus avellana HOM05D007580 ORTHO05D009620 9.7e-42 173.7 158 64.6
QL08p050656 Quercus lobata HOM05D007580 ORTHO05D009620 7.2e-37 157.5 154 62.3
Manes.01G262404 Manihot esculenta HOM05D007580 ORTHO05D009620 2.0e-34 149.4 147 61.2
Sabra02G0121300 Salix brachista HOM05D007580 ORTHO05D009620 9.7e-34 147.1 151 58.9
Potri.002G153000 Populus trichocarpa HOM05D007580 ORTHO05D009620 4.8e-33 144.8 151 58.9
Sabra14G0055200 Salix brachista HOM05D007580 ORTHO05D009620 2.4e-32 142.5 155 58.1
Manes.05G040200 Manihot esculenta HOM05D007580 ORTHO05D009620 3.1e-32 142.1 139 59.0
TWI14G1086 Tripterygium wilfordii HOM05D007580 ORTHO05D009620 5.3e-32 141.4 152 57.9
FAN03G2022 Fragaria x ananassa HOM05D007580 ORTHO05D009620 4.5e-31 138.3 142 59.9
FAN06G3292 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.0e-30 137.1 140 59.3
FAN06G5062 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.0e-30 137.1 140 59.3
FAN10G2444 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.7e-30 136.3 140 58.6
Potri.014G077000 Populus trichocarpa HOM05D007580 ORTHO05D009620 2.9e-30 135.6 153 54.9
FAN01G0874 Fragaria x ananassa HOM05D007580 ORTHO05D009620 4.2e-29 131.7 142 57.7
COL.COLO4_12626 Corchorus olitorius HOM05D007580 ORTHO05D009620 5.5e-29 131.3 157 54.8
Duzib133G0099 Durio zibethinus HOM05D007580 ORTHO05D009620 1.6e-28 129.8 159 52.8
Gohir.A08G129400 Gossypium hirsutum HOM05D007580 ORTHO05D009620 2.7e-28 129.0 158 54.4
Prupe.2G154500 Prunus persica HOM05D007580 ORTHO05D009620 4.7e-28 128.3 155 54.8
RcHm_v2.0_Chr1g0352211 Rosa chinensis HOM05D007580 ORTHO05D009620 8.0e-28 127.5 142 57.7
Duzib138G0841 Durio zibethinus HOM05D007580 ORTHO05D009620 3.0e-27 125.6 153 52.3
Gorai.004G156400 Gossypium raimondii HOM05D007580 ORTHO05D009620 3.9e-27 125.2 156 53.2
CANSAT56G4452 Cannabis sativa HOM05D007580 ORTHO05D009620 1.1e-26 123.6 141 54.6
Gohir.D08G150700 Gossypium hirsutum HOM05D007580 ORTHO05D009620 3.3e-26 122.1 156 52.6
Lalb_Chr01g0021151 Lupinus albus HOM05D007580 ORTHO05D009620 7.4e-26 120.9 158 50.0
Thecc.01G368700 Theobroma cacao HOM05D007580 ORTHO05D009620 7.4e-26 120.9 158 51.3
MELO3C022528.2 Cucumis melo HOM05D007580 ORTHO05D009620 2.8e-25 119.0 148 50.7
TPR.G37829 Trifolium pratense HOM05D007580 ORTHO05D009620 6.3e-25 117.9 140 52.9
MD07G1128600 Malus domestica HOM05D007580 ORTHO05D009620 1.4e-24 116.7 153 50.3
Sopen01g037570 Solanum pennellii HOM05D007580 ORTHO05D009620 1.4e-24 116.7 146 53.4
Medtr7g076270 Medicago truncatula HOM05D007580 ORTHO05D009620 2.4e-24 115.9 142 53.5
Solyc01g091790.2 Solanum lycopersicum HOM05D007580 ORTHO05D009620 2.4e-24 115.9 147 53.7
PGSC0003DMG400017056 Solanum tuberosum HOM05D007580 ORTHO05D009620 2.4e-24 115.9 150 52.0
Ciclev10023708m.g Citrus clementina HOM05D007580 ORTHO05D009620 4.1e-24 115.2 152 50.7
CsaV3_6G005830 Cucumis sativus L. HOM05D007580 ORTHO05D009620 9.1e-24 114.0 153 51.0
ClCG06G000100 Citrullus lanatus HOM05D007580 ORTHO05D009620 1.2e-23 113.6 165 47.9
Hma1.2p1_0398F.1_g143830 Hydrangea macrophylla HOM05D007580 ORTHO05D009620 2.0e-23 112.8 163 46.0
Psat0s1132g0080 Pisum sativum HOM05D007580 ORTHO05D009620 2.5e-21 105.9 158 48.1
CSS0034624 Camellia sinensis var. sinensis HOM05D007580 ORTHO05D009620 1.6e-20 103.2 141 48.9
Glyma.18G227800 Glycine max HOM05D007580 ORTHO05D009620 6.1e-20 101.3 152 49.3
Sed0005443 Sechium edule HOM05D007580 ORTHO05D009620 8.0e-20 100.9 143 46.9
Oeu024417.1 Olea europaea HOM05D007580 ORTHO05D009620 2.3e-19 99.4 156 42.9
GSVIVG01027528001 Vitis vinifera HOM05D007580 ORTHO05D009620 3.0e-19 99.0 137 47.4
Nn1g01349 Nelumbo nucifera HOM05D007580 ORTHO05D009620 4.0e-19 98.6 143 45.5
Ca_07865_v3 Cicer arietinum L. HOM05D007580 ORTHO05D009620 5.2e-19 98.2 146 45.2
DCAR_006906 Daucus carota HOM05D007580 ORTHO05D009620 3.4e-18 95.5 145 42.8
TAR375G0300 Trochodendron aralioides HOM05D007580 ORTHO05D009620 3.4e-18 95.5 150 44.0
Phvul.008G070400 Phaseolus vulgaris HOM05D007580 ORTHO05D009620 9.7e-18 94.0 140 44.3
Actinidia33444 Actinidia chinensis HOM05D007580 ORTHO05D009620 6.3e-17 91.3 141 45.4
Migut.B01687 Erythranthe guttata HOM05D007580 ORTHO05D009620 8.3e-17 90.9 154 43.5
Rhsim01G0155700 Rhododendron simsii HOM05D007580 ORTHO05D009620 8.3e-17 90.9 157 41.4
TAR003G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 1.1e-16 90.5 139 43.9
CARHR000490 Cardamine hirsuta HOM05D007580 ORTHO05D009620 1.8e-16 89.7 145 43.4
VMungo1383G0280 Vigna mungo HOM05D007580 ORTHO05D009620 2.4e-16 89.4 143 44.8
TAR656G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 4.1e-16 88.6 139 43.2
Aqoxy7G00453 Aquilegia oxysepala HOM05D007580 ORTHO05D009620 1.2e-15 87.0 151 39.7
Nitab4.5_0004550g0100 Nicotiana tabacum HOM05D007580 ORTHO05D009620 2.0e-15 86.3 163 38.0
Nitab4.5_0010430g0050 Nicotiana tabacum HOM05D007580 ORTHO05D009620 3.5e-15 85.5 146 38.4
Thhalv10009990m.g Eutrema salsugineum HOM05D007580 ORTHO05D009620 1.3e-14 83.6 145 43.4
PGR031G3829 Punica granatum HOM05D007580 ORTHO05D009620 2.9e-14 82.4 154 40.9
Cpa.g.sc18.198 Carica papaya HOM05D007580 ORTHO05D009620 3.8e-14 82.0 127 48.0
Carub.0001s0037 Capsella rubella HOM05D007580 ORTHO05D009620 6.5e-14 81.3 138 41.3
Peaxi162Scf00021g00055 Petunia axillaris HOM05D007580 ORTHO05D009620 1.9e-13 79.7 159 38.4
Aa31LG1G11200 Aethionema arabicum HOM05D007580 ORTHO05D009620 2.5e-13 79.3 145 40.7
THA.LOC104814091 Tarenaya hassleriana HOM05D007580 ORTHO05D009620 3.2e-13 79.0 140 42.9
Sp1g00440 Schrenkiella parvula HOM05D007580 ORTHO05D009620 5.5e-13 78.2 141 39.7
AL1G10480 Arabidopsis lyrata HOM05D007580 ORTHO05D009620 1.6e-12 76.6 137 41.6
AT1G01840 Arabidopsis thaliana HOM05D007580 ORTHO05D009620 2.1e-12 76.3 148 41.9
Glyma.09G264200 Glycine max HOM05D007580 ORTHO05D009620 3.6e-12 75.5 111 45.9
Lsat_1_v5_gn_7_8361 Lactuca sativa HOM05D007580 ORTHO05D009620 8.0e-12 74.3 144 43.1
Sc23g0003300 Simmondsia chinensis HOM05D007580 ORTHO05D009620 8.0e-12 74.3 140 38.6
A10p00190 Brassica napus HOM05D007580 ORTHO05D009620 1.8e-11 73.2 147 38.8
BcaB03g13622 Brassica carinata HOM05D007580 ORTHO05D009620 4.0e-11 72.0 142 35.9
BolC5t28812H Brassica oleracea HOM05D007580 ORTHO05D009620 4.0e-11 72.0 142 35.9
BraA10t42299Z Brassica rapa HOM05D007580 ORTHO05D009620 4.0e-11 72.0 147 38.8
ECA236G4638 Erigeron canadensis HOM05D007580 ORTHO05D009620 6.8e-11 71.2 146 41.1
HanXRQChr04g0121781 Helianthus annuus HOM05D007580 ORTHO05D009620 6.8e-11 71.2 138 40.6
Lj1g0023268 Lotus japonicus HOM05D007580 ORTHO05D009620 2.6e-10 69.3 122 43.4
PSO478G4117 Papaver somniferum HOM05D007580 ORTHO05D009620 2.6e-10 69.3 169 37.9
Lsat_1_v5_gn_7_8421 Lactuca sativa HOM05D007580 ORTHO05D009620 4.4e-10 68.6 146 40.4
PSO782G0900 Papaver somniferum HOM05D007580 ORTHO05D009620 9.8e-10 67.4 169 37.3
PSO782G1514 Papaver somniferum HOM05D007580 ORTHO05D009620 1.3e-09 67.0 170 37.1
vmacro20972 Vaccinium macrocarpon HOM05D007580 ORTHO05D009620 1.1e-08 63.9 126 38.1
AUR62026657 Chenopodium quinoa HOM05D007580 ORTHO05D009620 3.5e-07 58.9 134 41.8
SalBow3G0911 Salvia bowleyana HOM05D007580 ORTHO05D009620 3.5e-07 58.9 151 31.8
FAN10G0406 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.7e-06 56.6 64 57.8
AUR62033366 Chenopodium quinoa HOM05D007580 ORTHO05D009620 3.8e-06 55.5 102 45.1
SGA_v2.0_scaffold95G28871 Striga asiatica HOM05D007580 ORTHO05D009620 3.8e-06 55.5 148 33.8
Ah.05g176020 Amaranthus hybridus HOM05D007580 ORTHO05D009620 8.6e-06 54.3 141 36.2


User provided reference genes

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