Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 0.0e+00 1078.2 551 100.0
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 5.1e-259 897.5 550 83.6
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 2.1e-252 875.5 552 82.6
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 3.2e-237 825.1 642 71.2
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 3.2e-237 825.1 557 77.9
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 5.5e-237 824.3 558 76.9
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 4.6e-236 821.2 557 77.2
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 8.8e-235 817.0 564 75.9
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 6.9e-232 807.4 558 75.6
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 3.4e-231 805.1 557 76.3
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 5.9e-231 804.3 557 76.3
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 1.3e-230 803.1 561 75.4
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 6.5e-230 800.8 557 75.6
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.6e-228 796.2 556 75.0
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 1.6e-228 796.2 556 75.0
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 6.1e-228 794.3 557 75.6
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.4e-227 793.1 555 74.8
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 8.8e-227 790.4 559 73.9
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.1e-226 790.0 557 74.9
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 3.3e-226 788.5 554 74.9
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.7e-225 786.2 557 74.7
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.8e-224 782.7 558 74.6
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 5.9e-223 777.7 557 73.8
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 1.0e-222 776.9 558 72.9
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 2.9e-222 775.4 562 74.4
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 2.5e-221 772.3 557 73.4
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 9.4e-221 770.4 553 72.3
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 9.4e-221 770.4 557 72.9
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 3.6e-220 768.5 562 73.7
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 5.3e-216 754.6 563 72.6
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 9.1e-216 753.8 558 72.9
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.2e-215 753.4 557 71.6
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 7.7e-215 750.7 559 72.6
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 5.0e-214 748.0 562 71.4
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 1.8e-208 729.6 608 66.1
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 2.4e-208 729.2 561 69.9
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 7.7e-207 724.2 560 69.3
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 4.2e-205 718.4 557 69.3
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.3e-203 712.6 517 73.5
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.2e-202 710.3 551 69.3
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.2e-202 710.3 555 68.1
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.2e-202 710.3 554 67.9
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 1.5e-202 709.9 555 67.7
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 4.4e-202 708.4 559 69.8
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 4.4e-202 708.4 559 68.7
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 1.3e-201 706.8 557 68.9
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 2.8e-201 705.7 556 69.1
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 1.1e-200 703.7 551 68.4
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 1.4e-200 703.4 559 69.2
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 1.6e-199 699.9 559 68.7
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.6e-199 699.9 550 68.5
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.7e-198 696.4 550 68.5
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.5e-197 692.6 550 68.0
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 5.6e-197 691.4 570 66.7
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 1.6e-196 689.9 557 67.0
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 6.1e-196 688.0 551 69.3
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 6.1e-196 688.0 546 69.0
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 1.8e-195 686.4 560 67.7
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 3.0e-195 685.6 557 68.8
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 1.2e-194 683.7 563 67.0
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 2.2e-193 679.5 559 65.8
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 2.2e-193 679.5 565 66.4
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 3.7e-193 678.7 472 75.6
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 4.9e-193 678.3 543 66.7
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 6.4e-193 677.9 557 66.8
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 1.8e-192 676.4 562 66.0
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 5.4e-192 674.9 565 66.2
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 4.6e-191 671.8 564 66.5
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 5.9e-191 671.4 551 67.3
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 3.0e-190 669.1 579 64.4
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 1.1e-189 667.2 616 62.3
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.6e-188 663.3 579 63.9
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 1.6e-188 663.3 564 65.8
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 8.0e-188 661.0 585 62.4
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 5.8e-186 654.8 686 54.2
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 1.7e-185 653.3 559 65.5
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.4e-184 649.4 693 54.3
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 6.0e-183 644.8 552 63.2
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 6.0e-183 644.8 572 65.0
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 8.6e-182 641.0 473 71.0
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.8e-179 633.3 584 60.4
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 4.0e-179 632.1 567 61.7
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 8.9e-179 630.9 454 73.1
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.3e-177 627.1 526 66.9
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 1.9e-176 623.2 577 61.5
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 1.6e-175 620.2 571 61.6
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 2.1e-175 619.8 577 60.8
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 3.0e-174 615.9 567 63.0
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 3.9e-174 615.5 573 60.7
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.9e-173 613.2 571 60.6
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 4.7e-172 608.6 575 60.2
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.8e-171 606.7 574 61.0
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 8.9e-171 604.4 643 56.1
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 2.0e-170 603.2 574 60.6
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 1.3e-166 590.5 562 61.7
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 2.9e-161 572.8 566 59.2
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 1.1e-157 560.8 574 58.9
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 1.9e-157 560.1 574 58.9
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 1.9e-157 560.1 574 58.9
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 7.3e-157 558.1 528 60.6
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 7.3e-157 558.1 559 59.4
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 1.3e-156 557.4 559 58.1
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 4.8e-156 555.4 578 58.7
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 8.1e-156 554.7 578 58.3
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.6e-151 540.4 569 57.6
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 9.9e-146 521.2 426 67.1
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 4.6e-143 512.3 569 54.0
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 7.6e-138 495.0 587 51.3
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 6.5e-137 491.9 584 49.8
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 1.8e-134 483.8 422 64.0
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 6.3e-132 475.3 552 51.1
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 5.0e-129 465.7 564 50.2
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 2.5e-128 463.4 573 52.0
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 4.5e-122 442.6 391 61.4
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 2.2e-100 370.5 568 43.1
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.1e-96 358.2 369 55.3
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 2.7e-95 353.6 567 42.2
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 4.1e-83 313.2 322 55.9
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.7e-82 310.5 360 48.9
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 8.6e-81 305.4 493 42.4
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 1.3e-60 238.4 487 38.0
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 1.0e-57 228.8 260 48.1
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.9e-35 154.8 162 60.5
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 3.5e-26 124.0 86 77.9
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 4.3e-24 117.1 84 69.0
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.8e-22 111.7 125 52.8
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 3.1e-22 110.9 86 67.4
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 1.1e-19 102.4 180 33.3
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.8e-17 95.1 69 66.7
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.3e-15 89.0 237 29.1
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 4.8e-15 87.0 232 31.0
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 8.2e-15 86.3 217 32.7
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 9.0e-14 82.8 62 74.2
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.5e-13 82.0 230 26.5
TAR633G2245 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.1e-08 65.9 104 46.2
QL09p051344 Quercus lobata HOM05D005604 ORTHO05D006745 2.0e-08 65.1 41 78.0


User provided reference genes

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