Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 2608.6 1299 100.0
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1866.7 1333 72.9
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1859.3 1331 72.6
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1798.1 1336 70.4
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1513.4 1337 60.2
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1463.4 1329 59.4
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1441.8 1333 58.1
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1437.2 1328 58.4
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1390.2 1318 56.4
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1380.9 1361 55.7
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1379.4 1343 55.5
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1366.3 1347 55.1
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1364.7 1333 56.0
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1355.9 1342 55.6
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1350.9 1318 55.6
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1347.0 1338 55.6
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1342.8 1325 55.6
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1337.4 1325 55.5
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1337.0 1342 54.2
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1332.0 1342 54.0
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1329.7 1332 55.2
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1328.5 1342 53.8
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1320.8 1332 54.7
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1318.9 1333 55.1
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 1318.1 1333 54.9
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1297.7 1337 53.7
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1286.2 1281 55.7
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1277.3 1338 53.1
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1263.4 1325 52.1
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1258.0 1304 53.5
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1255.4 1321 52.7
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1248.4 1301 53.6
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1210.3 1330 51.7
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1185.2 1250 52.6
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1184.1 1288 50.8
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1181.8 1349 50.0
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1178.7 1186 54.6
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1177.2 1469 46.8
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 0.0e+00 1146.3 1345 47.5
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 0.0e+00 1126.3 1322 48.3
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1122.5 1356 48.7
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 0.0e+00 1119.4 1325 48.2
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 0.0e+00 1118.6 1348 47.2
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 0.0e+00 1104.0 1325 48.2
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1092.8 1327 46.6
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 0.0e+00 1085.9 1328 47.5
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 0.0e+00 1083.2 1220 48.6
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 1.4e-307 1060.1 1323 46.3
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 5.3e-307 1058.1 1344 46.3
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 5.9e-306 1054.7 1330 46.6
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 1.3e-305 1053.5 1328 46.5
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.9e-305 1052.4 1341 46.5
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 1.5e-304 1050.0 1315 46.1
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 3.0e-302 1042.3 1327 45.8
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 1.7e-300 1036.6 1327 46.2
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 6.3e-300 1034.6 1323 45.3
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 5.3e-299 1031.6 1344 44.6
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 9.1e-299 1030.8 1323 45.3
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 3.0e-294 1015.8 1234 46.4
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 3.0e-294 1015.8 1331 44.3
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 4.0e-294 1015.4 1338 46.1
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 2.0e-293 1013.1 1287 44.7
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 1.2e-290 1003.8 1320 44.0
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 1.9e-288 996.5 1340 45.0
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.4e-286 990.3 1330 43.4
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 2.7e-282 976.1 1337 43.2
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 2.3e-281 973.0 1324 44.0
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 6.6e-281 971.5 1275 44.7
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 9.8e-277 957.6 1330 43.0
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 1.7e-276 956.8 1355 43.0
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 1.7e-276 956.8 1356 44.9
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 4.9e-276 955.3 1343 42.7
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 3.5e-258 896.0 1289 42.2
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 5.1e-249 865.5 1336 40.4
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 8.1e-247 858.2 1323 40.7
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 3.8e-228 796.2 695 62.6
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 7.9e-226 788.5 1305 39.4
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.9e-224 783.9 1336 38.2
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 1.1e-222 778.1 1338 39.5
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 1.5e-221 774.2 1343 38.9
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.3e-217 761.1 711 59.1
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 7.9e-210 735.3 1080 41.5
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 5.5e-203 712.6 1327 36.8
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.0e-200 704.1 1308 37.8
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 3.8e-196 689.9 698 54.0
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 2.0e-192 677.6 1312 35.2
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 2.0e-192 677.6 1311 35.5
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.0e-188 665.2 1256 37.0
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.5e-184 651.4 686 53.9
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 3.3e-184 650.2 1238 35.9
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 6.3e-175 619.4 1310 34.0
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 5.4e-174 616.3 1271 35.2
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.9e-171 607.8 1139 36.4
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 5.5e-171 606.3 646 50.0
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 7.2e-171 605.9 1128 36.6
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 4.0e-161 573.5 534 56.4
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 1.2e-157 562.0 716 46.2
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.5e-155 555.1 835 43.2
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 6.8e-153 546.2 643 47.4
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 5.1e-140 503.4 716 43.3
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 3.4e-136 490.7 778 40.9
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.6e-112 411.4 763 34.2
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 9.9e-112 409.5 890 36.5
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 7.1e-110 403.3 678 40.3
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 7.9e-101 373.2 370 54.1
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 1.3e-100 372.5 697 36.4
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 3.0e-92 344.7 808 31.6
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 7.2e-86 323.6 806 30.1
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.5e-78 298.5 880 30.9
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.2e-69 269.6 593 30.5
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.1e-54 219.9 1189 23.8
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 9.2e-49 200.3 292 38.7
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 2.1e-45 189.1 581 31.2
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 3.4e-43 181.8 291 36.4
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 6.4e-42 177.6 562 30.8
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.5e-30 139.0 280 41.4
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.5e-30 139.0 280 41.4
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 1.1e-25 123.6 260 29.2
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 1.9e-25 122.9 114 57.0
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 9.2e-25 120.6 565 27.1
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 2.3e-23 115.9 217 36.4
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 6.6e-23 114.4 571 27.7
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 1.5e-22 113.2 494 28.5
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 9.5e-22 110.5 571 27.5
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 2.4e-20 105.9 561 26.6
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 5.2e-20 104.8 578 25.4
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 5.2e-20 104.8 254 31.9
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 1.2e-19 103.6 567 27.3
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.5e-19 103.2 404 22.8
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 5.8e-19 101.3 553 27.1
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 5.8e-19 101.3 553 27.1
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.7e-18 99.8 138 38.4
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 2.1e-16 92.8 99 50.5
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 6.0e-16 91.3 187 33.2
GSVIVG01002722001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.7e-15 89.7 96 47.9
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 3.9e-15 88.6 305 25.9
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 2.5e-14 85.9 564 24.8
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 2.8e-13 82.4 309 23.3
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 8.1e-13 80.9 327 22.6
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 3.1e-12 79.0 123 36.6
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 1.3e-10 73.6 102 48.0
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 9.3e-09 67.4 114 35.1
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.3e-07 63.5 90 42.2


User provided reference genes

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