Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 4.1e-198 694.5 345 100.0
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.4e-193 679.5 345 97.7
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 1.2e-176 623.2 375 82.9
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 1.2e-173 613.2 344 87.2
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 2.1e-162 575.9 345 80.0
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 5.2e-161 571.2 345 80.6
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 8.9e-161 570.5 345 78.6
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 4.4e-160 568.2 345 78.6
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.7e-159 566.2 345 78.3
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 8.4e-159 563.9 345 78.3
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.5e-157 558.5 349 77.1
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 3.9e-156 555.1 345 79.7
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 8.7e-156 553.9 343 78.7
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.1e-155 553.5 346 77.2
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 7.3e-155 550.8 349 77.7
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 4.8e-154 548.1 345 76.8
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 4.8e-154 548.1 348 78.4
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 1.8e-153 546.2 349 77.1
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 1.5e-152 543.1 354 75.1
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 2.6e-152 542.3 354 74.6
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 2.6e-152 542.3 346 76.0
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 4.5e-152 541.6 345 75.9
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 5.8e-152 541.2 349 77.4
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 1.7e-151 539.7 348 77.0
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 2.2e-151 539.3 345 75.7
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 2.9e-151 538.9 345 75.7
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 6.4e-151 537.7 345 76.5
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 6.4e-151 537.7 343 75.5
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 1.4e-150 536.6 349 75.9
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 3.5e-149 531.9 345 75.7
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 4.6e-149 531.6 374 71.1
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 8.7e-148 527.3 306 81.4
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 3.3e-147 525.4 344 73.0
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 4.3e-147 525.0 349 75.9
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 9.6e-147 523.9 346 74.6
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 1.3e-146 523.5 345 72.5
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 2.1e-146 522.7 345 72.8
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 2.8e-146 522.3 345 72.5
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 3.1e-145 518.8 344 74.7
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 4.0e-145 518.5 343 75.2
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 4.0e-145 518.5 345 75.4
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 5.3e-145 518.1 328 75.9
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 5.3e-145 518.1 345 75.1
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 6.9e-145 517.7 331 76.1
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 6.9e-145 517.7 345 73.0
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 6.9e-145 517.7 346 72.3
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 1.2e-144 516.9 347 72.9
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 1.7e-143 513.1 346 72.0
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 2.2e-143 512.7 348 71.8
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 8.4e-143 510.8 350 72.0
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.4e-142 510.0 349 71.6
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 3.2e-142 508.8 345 69.6
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 1.2e-141 506.9 361 68.1
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 1.6e-141 506.5 347 73.8
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 1.6e-141 506.5 347 73.8
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.6e-141 506.5 333 75.7
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 2.1e-141 506.1 343 69.7
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.0e-140 503.8 346 73.1
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 3.9e-140 501.9 342 72.2
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 8.7e-140 500.7 346 72.3
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 8.7e-140 500.7 340 75.0
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 1.1e-139 500.4 304 79.3
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 3.3e-139 498.8 346 73.1
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 7.4e-139 497.7 353 70.8
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 2.8e-138 495.7 340 72.1
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 6.2e-138 494.6 316 74.1
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.4e-137 493.4 306 77.1
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.4e-137 492.7 340 72.1
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 3.1e-137 492.3 347 69.7
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 5.3e-137 491.5 379 65.2
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 9.0e-137 490.7 340 71.2
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.0e-135 487.3 305 78.0
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 6.5e-135 484.6 343 69.7
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 1.1e-134 483.8 346 66.8
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 1.4e-134 483.4 343 68.8
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 6.7e-132 474.6 286 80.4
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 6.7e-132 474.6 346 68.2
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 5.7e-131 471.5 327 70.0
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 7.4e-131 471.1 351 68.4
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 1.7e-127 459.9 361 63.7
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 6.5e-127 458.0 350 64.9
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.9e-126 456.4 284 78.5
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 7.2e-126 454.5 343 64.7
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 2.1e-125 453.0 316 70.6
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 3.6e-125 452.2 299 72.9
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 1.3e-124 450.3 327 69.1
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 1.8e-124 449.9 324 67.9
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 2.3e-124 449.5 343 65.6
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 3.9e-124 448.7 317 68.5
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 5.1e-124 448.4 341 64.2
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 6.7e-124 448.0 324 68.2
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 1.5e-123 446.8 309 71.2
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.5e-123 446.8 316 69.3
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.9e-123 446.4 329 66.3
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 4.3e-123 445.3 279 73.8
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 5.7e-123 444.9 326 67.5
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 5.7e-123 444.9 307 68.7
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 1.3e-122 443.7 330 67.0
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.6e-122 443.4 324 66.4
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.2e-122 443.0 279 76.0
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 3.7e-122 442.2 330 65.2
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 4.8e-122 441.8 320 68.4
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 6.3e-122 441.4 279 74.6
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 8.2e-122 441.0 307 67.4
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 2.4e-121 439.5 319 65.2
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 6.9e-121 438.0 330 64.8
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 6.9e-121 438.0 330 64.8
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 6.9e-121 438.0 327 64.8
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.5e-120 436.8 334 63.8
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 2.6e-120 436.0 314 66.2
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 1.3e-119 433.7 346 63.9
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 2.2e-119 433.0 283 73.1
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 8.5e-119 431.0 314 65.6
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 8.2e-114 414.5 309 63.8
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 9.1e-113 411.0 312 63.1
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 4.5e-112 408.7 385 57.7
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 4.5e-112 408.7 341 62.8
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 1.4e-108 397.1 261 73.2
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 1.8e-108 396.7 362 58.6
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.0e-108 396.0 282 65.6
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 2.0e-107 393.3 333 62.2
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 9.7e-107 391.0 344 60.8
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 2.2e-106 389.8 330 62.1
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.4e-105 387.1 251 74.5
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 5.0e-103 378.6 360 57.5
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 2.5e-102 376.3 360 57.2
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.2e-101 374.0 325 57.5
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 3.6e-101 372.5 303 57.8
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.4e-100 370.5 340 58.2
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 4.0e-100 369.0 311 55.6
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 5.0e-95 352.1 309 54.4
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 9.8e-91 337.8 309 51.8
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 1.4e-89 334.0 235 66.0
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 1.2e-88 330.9 309 53.7
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 2.2e-87 326.6 335 50.4
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 4.0e-84 315.8 245 64.9
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 2.2e-82 310.1 281 55.2
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 5.4e-81 305.4 228 65.8
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 7.0e-81 305.1 318 55.0
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.0e-79 301.2 164 86.6
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.9e-79 299.7 203 71.4
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 6.8e-60 235.3 140 80.0
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 4.4e-59 232.6 162 66.0
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 4.4e-59 232.6 162 66.0
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.9e-49 200.7 112 84.8
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 3.1e-44 183.3 351 34.2
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 6.9e-44 182.2 118 72.0
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.3e-42 177.9 158 60.8
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 1.2e-40 171.4 312 36.9
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 6.2e-37 159.1 129 62.8
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.0e-35 154.1 164 52.4
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 8.4e-34 148.7 326 31.3
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 3.4e-27 126.7 361 32.1
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 2.9e-26 123.6 168 42.9
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 1.1e-25 121.7 87 67.8
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.4e-20 104.8 281 29.9
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 4.9e-18 96.3 105 46.7
FAN23G0103 Fragaria x ananassa HOM05D004652 ORTHO05D198901 2.9e-10 70.5 117 38.5


User provided reference genes

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