Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G010500 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.9e-32 141.7 65 100.0
CiPaw.01G010800 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.9e-32 141.7 65 100.0
CiPaw.01G010000 Carya illinoinensis HOM05D001579 ORTHO05D003470 2.5e-32 141.4 64 100.0
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 2.5e-32 141.4 64 100.0
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 2.5e-32 141.4 64 100.0
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 2.5e-32 141.4 64 100.0
Hund11566 Selenicereus undatus HOM05D001579 ORTHO05D003470 3.3e-32 141.0 64 98.4
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 3.3e-32 141.0 64 98.4
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 5.6e-32 140.2 64 98.4
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 5.6e-32 140.2 64 98.4
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 9.6e-32 139.4 64 95.3
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 9.6e-32 139.4 64 98.4
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.6e-31 138.7 64 96.9
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.6e-31 138.7 64 96.9
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 1.6e-31 138.7 64 96.9
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 1.6e-31 138.7 64 96.9
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 1.6e-31 138.7 64 96.9
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 1.6e-31 138.7 64 96.9
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 1.6e-31 138.7 64 96.9
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 1.6e-31 138.7 64 96.9
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 1.6e-31 138.7 64 96.9
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 2.1e-31 138.3 64 93.8
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 2.1e-31 138.3 64 93.8
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 2.1e-31 138.3 64 98.4
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 2.1e-31 138.3 64 98.4
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 2.1e-31 138.3 64 93.8
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 2.1e-31 138.3 64 93.8
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 2.1e-31 138.3 64 98.4
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 2.1e-31 138.3 64 98.4
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 2.1e-31 138.3 64 98.4
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 2.1e-31 138.3 64 98.4
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 2.1e-31 138.3 64 98.4
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 2.1e-31 138.3 64 98.4
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 2.8e-31 137.9 64 96.9
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 2.8e-31 137.9 64 96.9
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 3.6e-31 137.5 64 95.3
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 3.6e-31 137.5 64 93.8
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 4.8e-31 137.1 64 95.3
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 4.8e-31 137.1 64 96.9
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 6.2e-31 136.7 64 96.9
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 6.2e-31 136.7 65 95.4
Lj7C253T7 Lonicera japonica HOM05D001579 ORTHO05D003470 6.2e-31 136.7 65 95.4
Lj7A248G12 Lonicera japonica HOM05D001579 ORTHO05D003470 8.1e-31 136.3 64 95.3
Sp4g00870 Schrenkiella parvula HOM05D001579 ORTHO05D003470 8.1e-31 136.3 64 95.3
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 1.1e-30 136.0 64 96.9
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.1e-30 136.0 64 96.9
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.1e-30 136.0 64 96.9
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 1.1e-30 136.0 64 93.8
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 1.1e-30 136.0 64 93.8
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.4e-30 135.6 64 95.3
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.4e-30 135.6 64 95.3
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 1.4e-30 135.6 64 95.3
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 1.4e-30 135.6 64 95.3
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 1.4e-30 135.6 64 95.3
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 1.8e-30 135.2 64 93.8
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 2.4e-30 134.8 64 95.3
CDE06G1318 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 2.4e-30 134.8 64 95.3
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 2.4e-30 134.8 64 93.8
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 2.4e-30 134.8 64 93.8
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 2.4e-30 134.8 64 93.8
Lsat_1_v5_gn_2_67440 Lactuca sativa HOM05D001579 ORTHO05D003470 2.4e-30 134.8 64 93.8
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 2.4e-30 134.8 64 93.8
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 2.4e-30 134.8 64 95.3
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 3.1e-30 134.4 64 92.2
DCAR_006198 Daucus carota HOM05D001579 ORTHO05D003470 3.1e-30 134.4 63 95.2
vmacro11113 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 3.1e-30 134.4 64 93.8
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 4.0e-30 134.0 64 93.8
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 4.0e-30 134.0 64 93.8
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 4.0e-30 134.0 64 93.8
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 4.0e-30 134.0 64 93.8
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 4.0e-30 134.0 64 93.8
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 4.0e-30 134.0 64 93.8
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 4.0e-30 134.0 64 93.8
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 5.3e-30 133.7 64 92.2
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 5.3e-30 133.7 65 92.3
Hma1.2p1_0633F.1_g192550 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 5.3e-30 133.7 64 92.2
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 6.9e-30 133.3 64 92.2
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 6.9e-30 133.3 64 93.8
SGA_v2.0_scaffold32G13167 Striga asiatica HOM05D001579 ORTHO05D003470 6.9e-30 133.3 64 93.8
ATR1101G101 Amborella trichopoda HOM05D001579 ORTHO05D003470 9.0e-30 132.9 64 93.8
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 9.0e-30 132.9 64 92.2
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 9.0e-30 132.9 64 92.2
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 9.0e-30 132.9 64 92.2
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 9.0e-30 132.9 64 92.2
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 1.2e-29 132.5 64 93.8
SGA_v2.0_scaffold58G20534 Striga asiatica HOM05D001579 ORTHO05D003470 1.2e-29 132.5 64 92.2
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
Glyma.17G231300 Glycine max HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 93.8
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 93.8
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
Lalb_Chr03g0025681 Lupinus albus HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
SEGI_28257 Sequoiadendron giganteum HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 90.6
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 1.5e-29 132.1 64 92.2
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 2.0e-29 131.7 64 92.2
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 2.0e-29 131.7 64 92.2
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 2.0e-29 131.7 65 92.3
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 2.0e-29 131.7 65 92.3
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 2.0e-29 131.7 64 90.6
Hma1.2p1_0299F.1_g117910 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 2.0e-29 131.7 64 90.6
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 2.6e-29 131.3 64 90.6
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 2.6e-29 131.3 64 92.2
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 2.6e-29 131.3 64 90.6
Os10g0400800 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D003470 2.6e-29 131.3 64 93.8
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 3.4e-29 131.0 64 92.2
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 3.4e-29 131.0 64 90.6
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 4.5e-29 130.6 64 90.6
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 4.5e-29 130.6 64 90.6
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 4.5e-29 130.6 64 90.6
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 4.5e-29 130.6 64 90.6
Zm00001eb255720 Zea mays HOM05D001579 ORTHO05D003470 5.8e-29 130.2 64 92.2
CARHR112730 Cardamine hirsuta HOM05D001579 ORTHO05D003470 7.6e-29 129.8 64 89.1
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 9.9e-29 129.4 64 90.6
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 9.9e-29 129.4 64 90.6
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 1.3e-28 129.0 64 90.6
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 1.3e-28 129.0 64 90.6
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 1.3e-28 129.0 64 90.6
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.3e-28 129.0 64 89.1
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.3e-28 129.0 64 89.1
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 1.7e-28 128.6 64 89.1
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 1.7e-28 128.6 64 89.1
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.7e-28 128.6 64 89.1
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.7e-28 128.6 64 89.1
FAN20G1104 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.7e-28 128.6 64 89.1
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.7e-28 128.6 64 89.1
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 1.7e-28 128.6 64 89.1
Thhalv10007412m.g Eutrema salsugineum HOM05D001579 ORTHO05D003470 2.2e-28 128.3 64 89.1
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 2.2e-28 128.3 64 90.6
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 2.9e-28 127.9 64 87.5
CBR_g23301 Chara braunii HOM05D001579 ORTHO05D003470 3.8e-28 127.5 64 89.1
vmacro02105 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 3.8e-28 127.5 64 87.5
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 4.9e-28 127.1 64 87.5
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 6.4e-28 126.7 64 87.5
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 1.1e-27 125.9 64 87.5
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 1.4e-27 125.6 64 87.5
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 1.4e-27 125.6 64 87.5
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 1.4e-27 125.6 64 87.5
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 1.4e-27 125.6 64 87.5
Mapoly0012s0145 Marchantia polymorpha HOM05D001579 ORTHO05D003470 1.9e-27 125.2 64 87.5
SalBow6G2679 Salvia bowleyana HOM05D001579 ORTHO05D003470 1.9e-27 125.2 64 85.9
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 3.2e-27 124.4 64 87.5
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 4.2e-27 124.0 64 85.9
PRCOL_00000627 Prasinoderma coloniale HOM05D001579 ORTHO05D003470 4.2e-27 124.0 64 84.4
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 4.2e-27 124.0 64 85.9
CARHR265880 Cardamine hirsuta HOM05D001579 ORTHO05D003470 5.5e-27 123.6 64 87.5
Cre09.g389430 Chlamydomonas reinhardtii HOM05D001579 ORTHO05D003470 9.3e-27 122.9 64 85.9
MCO10G005 Micromonas commoda HOM05D001579 ORTHO05D003470 1.6e-26 122.1 64 84.4
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 2.7e-26 121.3 72 80.6
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 7.9e-26 119.8 71 78.9
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.3e-25 119.0 87 66.7
Haze_27501 Corylus avellana HOM05D001579 ORTHO05D003470 5.1e-25 117.1 64 79.7
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 1.5e-24 115.5 64 79.7
BcaC08g46255 Brassica carinata HOM05D001579 ORTHO05D003470 2.8e-23 111.3 54 90.7
Cfa025854 Carpinus fangiana HOM05D001579 ORTHO05D003470 1.1e-22 109.4 64 71.9
SalBow6G3810 Salvia bowleyana HOM05D001579 ORTHO05D003470 4.0e-22 107.5 54 87.0
CARHR112710 Cardamine hirsuta HOM05D001579 ORTHO05D003470 1.0e-20 102.8 47 95.7
PSO170G0890 Papaver somniferum HOM05D001579 ORTHO05D003470 2.2e-20 101.7 64 73.4
BcaC08g45384 Brassica carinata HOM05D001579 ORTHO05D003470 6.5e-20 100.1 64 73.4
C06p30160 Brassica napus HOM05D001579 ORTHO05D003470 6.5e-20 100.1 64 73.4
BolC6t38178H Brassica oleracea HOM05D001579 ORTHO05D003470 6.5e-20 100.1 64 73.4
QL11p043604 Quercus lobata HOM05D001579 ORTHO05D003470 4.2e-19 97.4 43 100.0
Cc00_g17000 Coffea canephora HOM05D001579 ORTHO05D003470 3.9e-17 90.9 45 88.9
CSS0030455 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 8.2e-15 83.2 43 86.0
BcaB03g15109 Brassica carinata HOM05D001579 ORTHO05D003470 1.5e-13 79.0 64 64.1
CAN.G294.17 Capsicum annuum HOM05D001579 ORTHO05D003470 2.4e-06 55.1 31 77.4


User provided reference genes

Program Settings