Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G010000 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.6e-51 205.7 97 100.0
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.4e-47 192.6 92 96.7
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 5.4e-47 190.7 92 95.7
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 1.6e-46 189.1 92 94.6
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 1.6e-46 189.1 92 94.6
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 2.7e-46 188.3 92 94.6
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 3.5e-46 188.0 92 93.5
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 7.8e-46 186.8 92 94.6
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 1.0e-45 186.4 92 93.5
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 1.7e-45 185.7 92 92.4
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 1.7e-45 185.7 92 92.4
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 2.3e-45 185.3 92 90.2
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 3.0e-45 184.9 92 92.4
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 5.1e-45 184.1 92 91.3
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 5.1e-45 184.1 92 89.1
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 5.1e-45 184.1 92 89.1
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 5.1e-45 184.1 92 89.1
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 6.6e-45 183.7 92 92.4
CDE06G1318 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 6.6e-45 183.7 92 92.4
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 8.6e-45 183.3 92 89.1
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.1e-44 183.0 92 91.3
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 1.1e-44 183.0 92 91.3
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 1.1e-44 183.0 92 91.3
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 1.1e-44 183.0 92 91.3
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 1.1e-44 183.0 92 90.2
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 1.1e-44 183.0 92 90.2
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.5e-44 182.6 92 91.3
Lsat_1_v5_gn_2_67440 Lactuca sativa HOM05D001579 ORTHO05D003470 1.5e-44 182.6 92 90.2
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 1.5e-44 182.6 91 92.3
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 1.5e-44 182.6 92 91.3
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 2.5e-44 181.8 92 90.2
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 2.5e-44 181.8 92 91.3
Lj7A248G12 Lonicera japonica HOM05D001579 ORTHO05D003470 2.5e-44 181.8 92 90.2
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 3.3e-44 181.4 92 92.4
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 3.3e-44 181.4 92 92.4
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 3.3e-44 181.4 92 92.4
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 3.3e-44 181.4 92 92.4
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 3.3e-44 181.4 92 92.4
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 3.3e-44 181.4 92 92.4
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 3.3e-44 181.4 92 92.4
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 4.3e-44 181.0 92 88.0
Hund11566 Selenicereus undatus HOM05D001579 ORTHO05D003470 4.3e-44 181.0 92 91.3
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 5.6e-44 180.6 92 89.1
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 7.3e-44 180.3 92 90.2
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 9.6e-44 179.9 92 90.2
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 9.6e-44 179.9 92 90.2
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 1.2e-43 179.5 92 90.2
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 1.2e-43 179.5 92 91.3
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 1.6e-43 179.1 92 89.1
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 1.6e-43 179.1 92 89.1
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 1.6e-43 179.1 92 89.1
vmacro11113 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 1.6e-43 179.1 92 89.1
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 1.6e-43 179.1 92 89.1
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 2.1e-43 178.7 92 89.1
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 2.1e-43 178.7 92 88.0
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 2.1e-43 178.7 92 88.0
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 2.8e-43 178.3 92 88.0
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 2.8e-43 178.3 92 87.0
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 2.8e-43 178.3 92 88.0
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 2.8e-43 178.3 92 87.0
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 2.8e-43 178.3 92 90.2
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 2.8e-43 178.3 92 90.2
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 2.8e-43 178.3 92 88.0
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 3.6e-43 177.9 92 85.9
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 3.6e-43 177.9 92 88.0
Lalb_Chr03g0025681 Lupinus albus HOM05D001579 ORTHO05D003470 3.6e-43 177.9 92 88.0
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 3.6e-43 177.9 92 88.0
ATR1101G101 Amborella trichopoda HOM05D001579 ORTHO05D003470 4.7e-43 177.6 92 89.1
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 4.7e-43 177.6 92 88.0
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 4.7e-43 177.6 92 88.0
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 4.7e-43 177.6 92 88.0
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 4.7e-43 177.6 92 88.0
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 4.7e-43 177.6 92 89.1
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 4.7e-43 177.6 92 88.0
Sp4g00870 Schrenkiella parvula HOM05D001579 ORTHO05D003470 4.7e-43 177.6 91 90.1
Glyma.17G231300 Glycine max HOM05D001579 ORTHO05D003470 6.2e-43 177.2 92 88.0
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 6.2e-43 177.2 92 87.0
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 6.2e-43 177.2 92 87.0
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 6.2e-43 177.2 92 87.0
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 6.2e-43 177.2 92 89.1
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 6.2e-43 177.2 92 89.1
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 8.1e-43 176.8 92 87.0
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 1.1e-42 176.4 92 88.0
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.1e-42 176.4 92 87.0
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 1.4e-42 176.0 92 88.0
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 1.4e-42 176.0 92 87.0
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 1.4e-42 176.0 92 85.9
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 1.8e-42 175.6 92 88.0
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 1.8e-42 175.6 92 87.0
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 1.8e-42 175.6 92 85.9
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 2.4e-42 175.3 92 87.0
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 2.4e-42 175.3 91 87.9
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 2.4e-42 175.3 91 87.9
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 3.1e-42 174.9 92 84.8
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.1e-42 174.9 92 85.9
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.1e-42 174.9 92 85.9
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 4.0e-42 174.5 92 85.9
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 4.0e-42 174.5 92 85.9
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 4.0e-42 174.5 92 85.9
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 4.0e-42 174.5 92 85.9
FAN20G1104 Fragaria x ananassa HOM05D001579 ORTHO05D003470 4.0e-42 174.5 92 85.9
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 4.0e-42 174.5 92 85.9
Hma1.2p1_0633F.1_g192550 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 4.0e-42 174.5 92 85.9
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 9.0e-42 173.3 92 88.0
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 9.0e-42 173.3 92 85.9
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 9.0e-42 173.3 92 85.9
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 1.2e-41 172.9 92 85.9
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 1.2e-41 172.9 91 86.8
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 1.2e-41 172.9 92 85.9
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 1.2e-41 172.9 92 85.9
SEGI_28257 Sequoiadendron giganteum HOM05D001579 ORTHO05D003470 1.2e-41 172.9 92 87.0
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 1.5e-41 172.6 92 85.9
Thhalv10007412m.g Eutrema salsugineum HOM05D001579 ORTHO05D003470 1.5e-41 172.6 92 85.9
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.5e-41 172.6 92 84.8
Hma1.2p1_0299F.1_g117910 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 1.5e-41 172.6 92 84.8
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 2.0e-41 172.2 91 87.9
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 2.0e-41 172.2 92 85.9
Os10g0400800 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D003470 3.4e-41 171.4 92 87.0
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 4.4e-41 171.0 92 85.9
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 4.4e-41 171.0 91 86.8
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 4.4e-41 171.0 92 85.9
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 4.4e-41 171.0 92 85.9
Zm00001eb255720 Zea mays HOM05D001579 ORTHO05D003470 7.6e-41 170.2 92 85.9
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 9.9e-41 169.9 92 82.6
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 1.3e-40 169.5 92 83.7
CARHR265880 Cardamine hirsuta HOM05D001579 ORTHO05D003470 1.7e-40 169.1 92 84.8
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 1.7e-40 169.1 83 92.8
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 2.2e-40 168.7 82 91.5
PRCOL_00000627 Prasinoderma coloniale HOM05D001579 ORTHO05D003470 2.9e-40 168.3 92 81.5
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 3.8e-40 167.9 92 81.5
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 1.1e-39 166.4 92 83.7
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 1.4e-39 166.0 100 80.0
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 1.9e-39 165.6 92 82.6
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.9e-39 165.6 99 78.8
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 1.9e-39 165.6 92 82.6
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 3.2e-39 164.9 115 69.6
Mapoly0012s0145 Marchantia polymorpha HOM05D001579 ORTHO05D003470 3.2e-39 164.9 92 81.5
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 5.4e-39 164.1 92 81.5
Cre09.g389430 Chlamydomonas reinhardtii HOM05D001579 ORTHO05D003470 5.4e-39 164.1 92 80.4
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 7.1e-39 163.7 92 81.5
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 7.1e-39 163.7 92 81.5
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 7.1e-39 163.7 92 81.5
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 3.9e-37 157.9 91 80.2
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 1.1e-36 156.4 92 78.3
MCO10G005 Micromonas commoda HOM05D001579 ORTHO05D003470 1.5e-36 156.0 92 75.0
SalBow6G2679 Salvia bowleyana HOM05D001579 ORTHO05D003470 1.9e-36 155.6 82 85.4
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 3.3e-36 154.8 89 80.9
DCAR_006198 Daucus carota HOM05D001579 ORTHO05D003470 4.3e-36 154.5 158 53.2
vmacro02105 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 1.1e-34 149.8 98 73.5
QL11p043604 Quercus lobata HOM05D001579 ORTHO05D003470 9.0e-34 146.7 71 94.4
Haze_27501 Corylus avellana HOM05D001579 ORTHO05D003470 5.8e-33 144.1 88 72.7
BcaC08g46255 Brassica carinata HOM05D001579 ORTHO05D003470 9.9e-33 143.3 81 81.5
Cfa025854 Carpinus fangiana HOM05D001579 ORTHO05D003470 2.2e-32 142.1 91 68.1
CiPaw.01G010500 Carya illinoinensis HOM05D001579 ORTHO05D003470 8.4e-32 140.2 64 100.0
CiPaw.01G010800 Carya illinoinensis HOM05D001579 ORTHO05D003470 8.4e-32 140.2 64 100.0
BcaC08g45384 Brassica carinata HOM05D001579 ORTHO05D003470 2.4e-31 138.7 92 72.8
C06p30160 Brassica napus HOM05D001579 ORTHO05D003470 2.4e-31 138.7 92 72.8
BolC6t38178H Brassica oleracea HOM05D001579 ORTHO05D003470 2.4e-31 138.7 92 72.8
Cc00_g17000 Coffea canephora HOM05D001579 ORTHO05D003470 4.2e-31 137.9 73 86.3
PSO170G0890 Papaver somniferum HOM05D001579 ORTHO05D003470 7.1e-31 137.1 92 71.7
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 2.7e-30 135.2 64 95.3
Lj7C253T7 Lonicera japonica HOM05D001579 ORTHO05D003470 2.7e-30 135.2 64 95.3
SGA_v2.0_scaffold32G13167 Striga asiatica HOM05D001579 ORTHO05D003470 4.6e-30 134.4 82 79.3
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 1.3e-29 132.9 64 93.8
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 2.3e-29 132.1 64 92.2
SGA_v2.0_scaffold58G20534 Striga asiatica HOM05D001579 ORTHO05D003470 3.9e-29 131.3 64 92.2
CARHR112710 Cardamine hirsuta HOM05D001579 ORTHO05D003470 5.1e-29 131.0 65 90.8
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 8.7e-29 130.2 64 92.2
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 8.7e-29 130.2 64 92.2
CARHR112730 Cardamine hirsuta HOM05D001579 ORTHO05D003470 2.5e-28 128.6 64 89.1
CSS0030455 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 4.3e-28 127.9 71 83.1
CBR_g23301 Chara braunii HOM05D001579 ORTHO05D003470 1.3e-27 126.3 64 89.1
BcaB03g15109 Brassica carinata HOM05D001579 ORTHO05D003470 5.5e-23 110.9 91 63.7
SalBow6G3810 Salvia bowleyana HOM05D001579 ORTHO05D003470 7.9e-22 107.1 54 87.0
BcaC08g46254 Brassica carinata HOM05D001579 ORTHO05D003470 1.3e-13 79.7 49 77.6
CBR_g19753 Chara braunii HOM05D004132 ORTHO05D006273 2.1e-06 55.8 74 37.8
CAN.G294.17 Capsicum annuum HOM05D001579 ORTHO05D003470 6.1e-06 54.3 31 77.4
MCO13G295 Micromonas commoda HOM05D004132 ORTHO05D006273 7.9e-06 53.9 74 41.9


User provided reference genes

Program Settings