Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.2e-106 389.8 184 100.0
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 3.4e-42 175.6 173 61.8
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 2.2e-41 172.9 174 58.6
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 4.2e-40 168.7 176 57.4
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 2.2e-33 146.4 169 50.9
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 6.7e-30 134.8 176 48.9
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.5e-29 133.7 165 49.7
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 1.3e-28 130.6 168 49.4
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.6e-28 130.2 170 48.8
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.8e-28 129.4 160 50.6
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 1.1e-27 127.5 162 46.9
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 1.2e-26 124.0 161 44.7
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 2.6e-26 122.9 175 46.3
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 7.7e-26 121.3 165 46.7
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 6.5e-25 118.2 180 47.2
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 1.4e-24 117.1 177 46.3
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 9.4e-24 114.4 178 43.3
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 1.6e-23 113.6 187 42.8
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 2.1e-23 113.2 164 42.1
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 4.6e-23 112.1 178 42.1
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 4.6e-23 112.1 180 40.0
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 7.9e-23 111.3 166 45.2
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 5.1e-22 108.6 161 45.3
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 2.0e-21 106.7 173 42.8
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.0e-21 106.7 172 41.9
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 4.3e-21 105.5 131 49.6
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 5.7e-21 105.1 156 47.4
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 7.4e-21 104.8 175 40.6
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 1.3e-20 104.0 160 36.2
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.2e-20 103.2 179 43.6
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 2.2e-20 103.2 178 44.4
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.8e-20 102.8 179 43.6
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 3.7e-20 102.4 163 41.7
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 4.8e-20 102.1 162 43.2
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 4.8e-20 102.1 178 42.7
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 8.2e-20 101.3 179 41.9
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.2e-20 101.3 169 41.4
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 1.1e-19 100.9 187 40.1
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.8e-19 100.1 179 41.3
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 4.1e-19 99.0 171 37.4
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 5.3e-19 98.6 148 45.3
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 6.9e-19 98.2 155 39.4
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 9.1e-19 97.8 155 40.6
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 1.2e-18 97.4 169 37.9
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 2.0e-18 96.7 166 38.0
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.6e-18 96.3 169 40.2
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 2.6e-18 96.3 166 38.0
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.4e-18 95.9 167 40.7
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.4e-18 95.9 167 40.7
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 7.7e-18 94.7 152 42.8
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.3e-17 94.0 154 44.2
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 1.7e-17 93.6 175 40.0
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 2.2e-17 93.2 176 35.8
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 3.8e-17 92.4 158 41.8
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 5.0e-17 92.0 110 45.5
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.0e-17 92.0 163 40.5
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.4e-16 90.5 156 41.0
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.9e-16 90.1 170 37.1
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.5e-16 89.7 158 38.0
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 4.2e-16 89.0 158 38.0
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 5.5e-16 88.6 157 39.5
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 9.4e-16 87.8 152 38.8
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 1.6e-15 87.0 148 39.2
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.3e-14 83.2 154 37.7
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 3.0e-14 82.8 109 48.6
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 3.0e-14 82.8 160 36.2
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.7e-14 81.6 154 37.0
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 8.8e-14 81.3 161 39.8
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.1e-13 80.9 168 35.7
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-13 80.5 154 37.0
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 4.4e-13 79.0 113 42.5
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 5.7e-13 78.6 156 38.5
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 9.7e-13 77.8 182 33.0
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.7e-12 77.0 106 41.5
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 4.8e-12 75.5 159 39.6
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 4.8e-12 75.5 159 35.8
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 4.8e-12 75.5 149 38.3
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 6.3e-12 75.1 152 33.6
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 6.3e-12 75.1 180 34.4
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 1.4e-11 73.9 150 40.0
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 3.1e-11 72.8 155 33.5
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 4.1e-11 72.4 158 36.1
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.2e-10 70.9 157 36.3
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 1.6e-10 70.5 147 36.1
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 1.6e-10 70.5 157 36.9
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 2.0e-10 70.1 165 35.2
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 2.0e-10 70.1 165 32.7
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 2.0e-10 70.1 105 40.0
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 2.6e-10 69.7 142 41.5
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 3.5e-10 69.3 168 30.4
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.5e-10 69.3 159 35.8
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 3.5e-10 69.3 138 35.5
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.5e-10 68.9 159 35.8
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 4.5e-10 68.9 155 34.2
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.7e-10 68.2 161 32.9
Potri.014G012900 Populus trichocarpa HOM05D005317 ORTHO05D005146 7.7e-10 68.2 176 33.5
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 1.0e-09 67.8 155 32.3
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 1.7e-09 67.0 150 36.0
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 1.7e-09 67.0 138 34.1
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 3.8e-09 65.9 79 48.1
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 3.8e-09 65.9 113 39.8
Lsat_1_v5_gn_4_159841 Lactuca sativa HOM05D005317 ORTHO05D005146 3.8e-09 65.9 175 33.1
PGSC0003DMG400021404 Solanum tuberosum HOM05D061607 ORTHO05D005146 5.0e-09 65.5 154 31.8
CsaV3_6G044310 Cucumis sativus L. HOM05D005317 ORTHO05D005146 8.5e-09 64.7 151 38.4
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 8.5e-09 64.7 156 31.4
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 1.1e-08 64.3 109 38.5
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 1.5e-08 63.9 126 33.3
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.9e-08 63.5 165 30.3
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 1.9e-08 63.5 149 32.9
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.5e-08 63.2 106 36.8
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.2e-08 62.8 106 36.8
AUR62041096 Chenopodium quinoa HOM05D051035 ORTHO05D005146 4.2e-08 62.4 98 38.8
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.2e-08 62.4 106 36.8
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 4.2e-08 62.4 145 29.7
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 1.6e-07 60.5 151 29.8
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 1.6e-07 60.5 172 30.2
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 1.6e-07 60.5 151 37.7
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.6e-07 60.5 164 32.9
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 2.7e-07 59.7 99 40.4
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 2.7e-07 59.7 189 31.2
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 3.6e-07 59.3 148 31.8
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 3.6e-07 59.3 155 30.3
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 4.7e-07 58.9 183 29.5
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 4.7e-07 58.9 145 31.7
arahy.Tifrunner.gnm1.ann1.K9IMQL Arachis hypogaea HOM05D005317 ORTHO05D005146 6.1e-07 58.5 179 30.7
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.0e-06 57.8 170 27.6
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.8e-06 57.0 164 31.1
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 5.2e-06 55.5 154 31.2
HPP92_026659 Vanilla planifolia HOM05D066124 ORTHO05D051582 5.2e-06 55.5 169 28.4
arahy.Tifrunner.gnm1.ann1.G8H34X Arachis hypogaea HOM05D005317 ORTHO05D005146 6.7e-06 55.1 107 38.3


User provided reference genes

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