Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 4.5e-149 531.2 258 100.0
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 1.5e-99 366.7 271 69.4
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 1.2e-98 363.6 252 72.6
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 2.6e-96 355.9 257 68.9
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 4.4e-96 355.1 258 69.0
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.4e-96 355.1 226 75.2
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 7.5e-96 354.4 254 68.1
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 3.7e-95 352.1 254 70.1
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 6.4e-95 351.3 258 69.8
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 1.9e-94 349.7 263 64.6
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 2.4e-94 349.4 236 72.0
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 3.2e-94 349.0 251 70.1
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.2e-94 349.0 250 69.2
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 4.1e-94 348.6 226 72.1
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 4.1e-94 348.6 252 70.6
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 4.1e-94 348.6 242 68.2
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 9.2e-94 347.4 204 81.9
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 1.2e-93 347.1 251 70.1
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 1.2e-93 347.1 255 65.9
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 1.6e-93 346.7 237 71.3
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.6e-93 346.7 227 72.2
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 1.6e-93 346.7 248 68.1
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 1.6e-93 346.7 202 80.2
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 1.6e-93 346.7 248 69.4
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.7e-93 345.9 204 77.9
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 3.5e-93 345.5 213 76.1
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 1.0e-92 344.0 252 71.4
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 6.6e-92 341.3 202 77.2
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 8.6e-92 340.9 258 67.8
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 1.1e-91 340.5 250 66.4
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 1.5e-91 340.1 234 70.9
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.5e-91 340.1 248 67.7
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 1.9e-91 339.7 210 75.2
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 3.3e-91 339.0 237 69.2
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 7.3e-91 337.8 202 78.2
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 7.3e-91 337.8 254 66.9
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 7.3e-91 337.8 262 63.4
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 9.5e-91 337.4 224 70.5
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 1.2e-90 337.0 253 67.6
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.6e-90 336.7 251 64.9
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.8e-90 335.9 260 64.6
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 3.6e-90 335.5 255 63.5
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 6.2e-90 334.7 204 77.0
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 6.2e-90 334.7 204 77.5
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 8.1e-90 334.3 244 69.7
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 8.1e-90 334.3 204 77.0
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 1.8e-89 333.2 214 72.9
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 1.8e-89 333.2 196 77.0
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 2.3e-89 332.8 247 65.2
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 2.3e-89 332.8 251 65.3
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 3.1e-89 332.4 198 78.8
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.2e-89 331.6 252 67.5
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 1.2e-88 330.5 235 69.8
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 3.4e-88 328.9 206 74.3
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 4.4e-88 328.6 267 63.7
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 1.3e-87 327.0 202 75.2
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 1.7e-87 326.6 258 65.9
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.7e-87 326.6 258 65.9
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 1.7e-87 326.6 238 67.6
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 2.2e-87 326.2 263 64.6
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 2.9e-87 325.9 235 67.7
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 3.7e-87 325.5 205 74.1
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 4.9e-87 325.1 261 62.1
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 1.4e-86 323.6 262 65.3
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 1.9e-86 323.2 248 66.1
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 2.4e-86 322.8 196 75.5
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 2.4e-86 322.8 197 75.1
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 4.1e-86 322.0 206 72.8
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 4.1e-86 322.0 247 65.6
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 5.4e-86 321.6 228 68.0
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 5.4e-86 321.6 233 66.1
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 5.4e-86 321.6 242 65.7
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 7.1e-86 321.2 222 68.5
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 1.2e-85 320.5 238 66.4
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 2.1e-85 319.7 209 70.8
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 2.7e-85 319.3 188 78.2
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 6.0e-85 318.2 202 73.8
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.3e-84 317.0 196 73.0
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 1.7e-84 316.6 207 71.5
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 1.7e-84 316.6 207 71.5
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 1.7e-84 316.6 208 72.1
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 3.0e-84 315.8 206 71.4
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 3.0e-84 315.8 206 71.8
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 3.0e-84 315.8 188 77.1
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 3.0e-84 315.8 259 62.5
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 5.1e-84 315.1 208 70.7
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 1.1e-83 313.9 253 62.1
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 1.1e-83 313.9 253 62.1
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 3.3e-83 312.4 199 73.9
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 3.3e-83 312.4 198 74.7
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 5.6e-83 311.6 201 72.6
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 8.1e-82 307.8 266 59.8
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 1.8e-81 306.6 254 60.2
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 2.4e-81 306.2 259 62.2
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 6.8e-81 304.7 209 68.4
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 8.9e-81 304.3 263 58.9
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 5.8e-80 301.6 196 70.9
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 1.7e-79 300.1 214 67.8
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.9e-79 299.3 198 72.7
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 1.4e-78 297.0 190 72.6
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 2.4e-78 296.2 240 64.2
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 3.2e-78 295.8 240 61.2
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.6e-77 293.5 185 72.4
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 2.7e-77 292.7 199 68.8
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 7.8e-77 291.2 158 84.8
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 8.7e-76 287.7 193 70.5
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.1e-75 287.3 159 81.1
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 1.6e-74 283.5 157 82.8
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 1.6e-74 283.5 196 67.3
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 3.6e-74 282.3 214 67.3
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 4.8e-74 282.0 165 77.0
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 3.1e-73 279.3 202 67.8
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.3e-73 278.5 252 59.9
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 1.2e-72 277.3 216 61.1
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 4.4e-72 275.4 212 64.6
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 2.2e-71 273.1 196 65.8
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 6.6e-68 261.5 186 63.4
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 4.5e-64 248.8 244 57.4
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 4.5e-64 248.8 232 55.2
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 8.4e-63 244.6 176 58.0
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 2.6e-56 223.0 148 73.0
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 1.9e-54 216.9 224 48.2
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 3.2e-54 216.1 152 67.8
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 1.3e-50 204.1 129 68.2
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.9e-46 190.3 100 85.0
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.1e-44 182.2 151 64.9
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 1.9e-43 180.3 100 83.0
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.5e-38 163.3 106 68.9
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 9.4e-38 161.4 91 81.3
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.6e-37 160.6 155 58.7
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 3.6e-37 159.5 94 78.7
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.6e-29 132.9 198 39.9
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.6e-29 132.9 100 68.0
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 8.5e-23 111.7 160 39.4
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 7.2e-22 108.6 69 78.3
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 2.7e-21 106.7 151 45.0
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 3.7e-18 96.3 176 33.5
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 4.8e-18 95.9 178 31.5
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.4e-17 94.4 184 32.6
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 5.3e-17 92.4 132 40.2
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 3.5e-16 89.7 53 77.4
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 5.5e-14 82.4 54 74.1
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 7.2e-14 82.0 157 32.5
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 4.0e-12 76.3 133 34.6
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 8.8e-12 75.1 116 44.0
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 1.2e-11 74.7 224 26.8
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.2e-10 70.5 44 65.9
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 3.1e-09 66.6 37 86.5
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.5e-08 63.2 61 47.5
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 1.3e-07 61.2 82 42.7
AagrBONN_evm.TU.Sc2ySwM_368.978 Anthoceros agrestis HOM05D016606 ORTHO05D018318 2.9e-07 60.1 184 26.1
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 5.0e-07 59.3 110 34.5
Sopen08g016900 Solanum pennellii HOM05D004917 ORTHO05D005954 1.1e-06 58.2 78 42.3
Oeu013340.1 Olea europaea HOM05D004917 ORTHO05D005954 7.2e-06 55.5 81 38.3


User provided reference genes

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