Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 0.0e+00 1824.7 960 100.0
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 1.5e-24 119.4 885 21.1
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 9.8e-24 116.7 927 21.6
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 2.2e-23 115.5 742 20.9
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 3.7e-23 114.8 668 22.2
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 4.9e-23 114.4 661 22.8
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 4.9e-23 114.4 925 21.5
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 6.4e-23 114.0 930 21.5
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 6.4e-23 114.0 877 21.2
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.1e-22 113.2 853 21.7
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.4e-22 112.8 813 22.3
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-22 112.8 875 22.6
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.4e-22 112.8 942 21.8
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.9e-22 112.5 751 21.3
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 3.2e-22 111.7 617 24.0
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 5.4e-22 110.9 735 22.9
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 7.1e-22 110.5 804 21.1
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 1.0e-20 106.7 607 23.6
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.0e-20 106.7 616 23.2
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 1.3e-20 106.3 869 21.4
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 1.7e-20 105.9 671 22.1
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 1.7e-20 105.9 609 23.2
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 3.0e-20 105.1 938 22.7
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 3.0e-20 105.1 754 22.7
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 5.1e-20 104.4 667 24.3
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 5.1e-20 104.4 879 22.1
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.1e-19 103.2 676 22.5
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 1.1e-19 103.2 877 20.4
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 2.5e-19 102.1 650 23.7
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 7.3e-19 100.5 929 22.4
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 7.3e-19 100.5 670 22.1
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 9.5e-19 100.1 930 22.4
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 1.6e-18 99.4 889 20.9
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.6e-18 99.4 494 24.7
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.6e-18 99.4 613 22.0
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 1.6e-18 99.4 475 24.2
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 1.6e-18 99.4 582 22.5
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 2.1e-18 99.0 596 21.8
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 4.7e-18 97.8 743 22.1
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 4.7e-18 97.8 494 23.7
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 4.7e-18 97.8 598 23.6
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.1e-17 96.7 677 22.9
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 1.1e-17 96.7 851 21.3
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 3.1e-17 95.1 855 21.2
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 3.1e-17 95.1 451 23.5
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 3.1e-17 95.1 647 23.2
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 5.2e-17 94.4 676 22.9
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 6.8e-17 94.0 589 23.1
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 8.9e-17 93.6 660 23.6
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 8.9e-17 93.6 874 20.3
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 8.9e-17 93.6 603 22.7
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 2.0e-16 92.4 621 22.5
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 2.0e-16 92.4 940 20.6
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 2.6e-16 92.0 425 23.5
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 2.6e-16 92.0 869 20.3
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 3.4e-16 91.7 862 20.8
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 5.8e-16 90.9 608 23.4
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 7.6e-16 90.5 571 24.0
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 7.6e-16 90.5 881 20.5
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 1.3e-15 89.7 670 21.8
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 2.9e-15 88.6 704 21.2
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 3.7e-15 88.2 602 22.6
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 3.7e-15 88.2 548 21.5
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.9e-15 87.8 605 23.6
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 8.3e-15 87.0 652 22.1
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 8.3e-15 87.0 704 20.7
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 8.3e-15 87.0 579 21.1
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.1e-14 86.7 603 24.4
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 1.4e-14 86.3 704 21.6
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 2.4e-14 85.5 605 21.3
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 2.4e-14 85.5 576 23.3
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 4.1e-14 84.7 593 23.4
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 5.4e-14 84.3 945 20.2
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 7.1e-14 84.0 423 22.5
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 9.2e-14 83.6 652 21.9
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 9.2e-14 83.6 670 20.0
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 4.6e-13 81.3 438 21.7
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 1.0e-12 80.1 635 20.3
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 1.3e-12 79.7 604 22.5
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.7e-12 79.3 590 21.9
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 1.7e-12 79.3 600 22.5
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 3.0e-12 78.6 599 22.2
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 3.9e-12 78.2 409 21.5
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 5.1e-12 77.8 337 23.4
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 8.6e-12 77.0 425 23.5
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.5e-11 76.3 419 22.7
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 1.5e-11 76.3 528 22.5
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 1.5e-11 76.3 152 32.2
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.5e-11 75.5 570 19.5
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 4.3e-11 74.7 497 24.9
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.6e-11 74.3 345 22.6
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 5.6e-11 74.3 754 20.8
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 7.3e-11 73.9 244 26.6
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 7.3e-11 73.9 244 26.6
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.8e-10 72.0 683 21.5
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 8.1e-10 70.5 296 22.6
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.4e-09 69.7 445 20.9
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 2.4e-09 68.9 185 28.1
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 8.9e-09 67.0 504 21.2
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 8.9e-09 67.0 493 21.5
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 2.6e-08 65.5 150 28.0
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 3.4e-08 65.1 176 26.7
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 4.4e-08 64.7 73 41.1
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 1.7e-07 62.8 436 20.9
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 6.4e-07 60.8 683 21.2
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.1e-06 60.1 150 28.7
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 1.9e-06 59.3 187 26.2


User provided reference genes

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