Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 6.0e-258 893.6 447 100.0
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 4.0e-60 236.5 472 38.1
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 3.7e-58 229.9 417 37.4
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 7.0e-57 225.7 443 38.1
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.6e-56 224.6 403 39.2
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.6e-56 224.6 403 39.2
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 1.7e-55 221.1 406 37.2
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 1.7e-55 221.1 433 37.9
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 2.9e-55 220.3 408 38.0
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 3.8e-55 219.9 445 37.1
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 5.0e-55 219.5 433 37.6
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 3.3e-54 216.9 405 36.5
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 5.5e-54 216.1 405 37.8
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 5.5e-54 216.1 400 36.8
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 9.5e-54 215.3 413 36.1
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 1.2e-53 214.9 410 38.3
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 2.1e-53 214.2 423 37.1
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 2.1e-53 214.2 400 36.5
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 2.8e-53 213.8 410 38.0
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 2.8e-53 213.8 396 37.1
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 3.6e-53 213.4 413 35.6
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 4.7e-53 213.0 427 36.8
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 6.1e-53 212.6 425 36.0
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 8.0e-53 212.2 402 37.3
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.0e-52 211.8 433 37.4
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 3.0e-52 210.3 351 40.2
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 3.0e-52 210.3 395 36.7
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 4.0e-52 209.9 415 37.1
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 4.0e-52 209.9 416 36.3
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 6.8e-52 209.1 397 37.3
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 8.9e-52 208.8 428 36.4
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 8.9e-52 208.8 423 35.7
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 1.5e-51 208.0 400 36.2
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 2.0e-51 207.6 401 37.7
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.0e-51 207.6 404 37.4
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 2.6e-51 207.2 405 37.8
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 4.4e-51 206.5 406 35.2
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 4.4e-51 206.5 402 37.6
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 5.7e-51 206.1 398 37.2
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 7.5e-51 205.7 411 35.3
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 9.8e-51 205.3 395 36.2
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.7e-50 204.5 402 35.1
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 2.2e-50 204.1 424 36.3
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 2.8e-50 203.8 395 36.5
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 2.8e-50 203.8 406 35.5
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 3.7e-50 203.4 405 36.3
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 3.7e-50 203.4 412 36.4
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 4.9e-50 203.0 404 35.9
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 4.9e-50 203.0 445 36.0
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 4.9e-50 203.0 394 36.0
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 6.3e-50 202.6 399 36.1
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 6.3e-50 202.6 403 36.2
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 8.3e-50 202.2 406 35.0
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 8.3e-50 202.2 403 36.5
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 8.3e-50 202.2 422 35.3
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.1e-49 201.8 397 37.5
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 1.1e-49 201.8 417 37.4
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 1.4e-49 201.4 396 36.6
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 1.8e-49 201.1 406 36.0
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 2.4e-49 200.7 428 34.8
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 2.4e-49 200.7 403 36.2
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 2.4e-49 200.7 405 35.6
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 3.2e-49 200.3 411 34.8
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 4.1e-49 199.9 397 38.0
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 4.1e-49 199.9 397 37.5
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 4.1e-49 199.9 397 38.0
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 5.4e-49 199.5 402 36.1
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 7.0e-49 199.1 409 36.2
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 1.2e-48 198.4 400 35.5
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 1.6e-48 198.0 397 34.8
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 2.0e-48 197.6 421 35.6
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 3.5e-48 196.8 403 36.0
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 4.5e-48 196.4 402 35.8
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 7.8e-48 195.7 397 36.0
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 7.8e-48 195.7 406 35.7
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.0e-47 195.3 431 34.8
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 1.0e-47 195.3 414 34.8
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 1.3e-47 194.9 414 34.8
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 2.3e-47 194.1 418 35.6
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 6.6e-47 192.6 415 35.4
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 1.5e-46 191.4 462 33.5
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 4.3e-46 189.9 431 34.1
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 5.6e-46 189.5 393 36.1
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 9.5e-46 188.7 468 33.5
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 1.0e-44 185.3 414 34.3
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 2.6e-43 180.6 354 35.9
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 1.3e-42 178.3 493 32.0
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 3.2e-41 173.7 446 31.2
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 4.6e-40 169.9 397 35.0
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 7.8e-40 169.1 340 35.0
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 5.6e-38 162.9 370 32.2
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 8.1e-37 159.1 303 36.0
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 3.1e-36 157.1 309 35.6
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 5.2e-36 156.4 308 34.7
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 6.8e-36 156.0 419 34.4
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 8.9e-36 155.6 342 33.6
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 1.5e-35 154.8 303 37.3
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.7e-34 151.4 356 32.3
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.9e-34 150.6 341 33.1
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 3.7e-34 150.2 374 32.4
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 6.6e-31 139.4 448 27.7
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 1.8e-28 131.3 280 35.4
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 4.4e-27 126.7 284 33.8
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 5.4e-25 119.8 277 35.0
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 5.4e-25 119.8 277 35.0
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 1.6e-24 118.2 183 41.0
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.0e-23 115.5 188 38.8
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.0e-23 115.5 188 38.8
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 5.1e-23 113.2 433 28.2
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 5.1e-23 113.2 321 29.9
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 6.6e-23 112.8 159 45.3
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 1.9e-22 111.3 416 29.6
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 1.6e-21 108.2 182 39.0
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 3.6e-21 107.1 401 27.9
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.1e-20 105.5 394 27.9
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 8.9e-20 102.4 416 27.9
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 1.3e-18 98.6 171 39.2
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 5.4e-17 93.2 158 36.7
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 2.1e-16 91.3 303 28.4
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.3e-15 87.8 242 28.5
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 2.3e-15 87.8 249 30.5
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 1.9e-14 84.7 178 33.1
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 5.3e-12 76.6 160 33.1
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 9.0e-12 75.9 429 24.7
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 9.3e-09 65.9 141 31.2
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.7e-07 61.6 73 50.7
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 2.3e-07 61.2 82 40.2
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.5e-06 58.5 59 55.9
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 3.3e-06 57.4 72 43.1


User provided reference genes

Program Settings