Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 0.0e+00 1255.7 641 100.0
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 2.7e-17 94.7 137 40.9
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 4.3e-15 87.4 430 24.9
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 1.6e-14 85.5 187 32.1
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 1.6e-14 85.5 515 23.7
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 6.2e-14 83.6 151 36.4
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 6.2e-14 83.6 441 24.5
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 8.1e-14 83.2 447 24.2
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 8.1e-14 83.2 442 25.1
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.1e-13 82.8 176 33.5
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 1.1e-13 82.8 431 23.2
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 1.4e-13 82.4 174 31.6
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 1.4e-13 82.4 174 31.6
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 1.4e-13 82.4 174 31.6
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 1.4e-13 82.4 163 32.5
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 1.4e-13 82.4 441 24.9
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 1.4e-13 82.4 163 33.1
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 1.4e-13 82.4 604 22.7
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 1.8e-13 82.0 451 24.8
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.3e-13 81.6 548 23.4
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 2.3e-13 81.6 454 24.7
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 3.1e-13 81.3 449 24.9
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 3.1e-13 81.3 446 24.4
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 4.0e-13 80.9 158 34.2
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 4.0e-13 80.9 158 34.2
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 4.0e-13 80.9 445 24.3
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 4.0e-13 80.9 444 25.7
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 5.2e-13 80.5 192 30.7
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.2e-13 80.5 438 24.2
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.2e-13 80.5 438 24.2
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 6.8e-13 80.1 173 32.4
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 1.2e-12 79.3 447 23.7
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.2e-12 79.3 476 24.2
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.2e-12 79.3 476 24.2
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 1.5e-12 79.0 163 32.5
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 1.5e-12 79.0 441 24.7
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 2.0e-12 78.6 160 33.8
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 2.0e-12 78.6 160 33.1
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 2.0e-12 78.6 175 31.4
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 2.0e-12 78.6 219 28.8
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.0e-12 78.6 439 24.1
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 2.0e-12 78.6 166 33.1
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 2.0e-12 78.6 451 22.8
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 2.6e-12 78.2 174 31.0
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 2.6e-12 78.2 211 30.8
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 2.6e-12 78.2 174 30.5
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 2.6e-12 78.2 190 32.1
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 3.4e-12 77.8 165 31.5
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 3.4e-12 77.8 442 22.9
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 4.4e-12 77.4 174 32.2
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 4.4e-12 77.4 437 24.5
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 4.4e-12 77.4 442 22.9
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 5.8e-12 77.0 412 25.0
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 7.5e-12 76.6 442 23.8
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 9.8e-12 76.3 174 29.3
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 9.8e-12 76.3 153 33.3
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 1.3e-11 75.9 160 32.5
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 1.3e-11 75.9 165 30.9
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 1.3e-11 75.9 164 32.3
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 1.3e-11 75.9 159 30.8
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 1.3e-11 75.9 439 23.7
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 1.7e-11 75.5 162 30.9
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.7e-11 75.5 166 29.5
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 1.7e-11 75.5 445 23.8
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 1.7e-11 75.5 257 27.2
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 2.2e-11 75.1 448 23.4
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 2.2e-11 75.1 190 30.5
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 2.2e-11 75.1 162 31.5
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 2.9e-11 74.7 164 31.7
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 2.9e-11 74.7 166 31.3
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 2.9e-11 74.7 438 22.4
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 2.9e-11 74.7 260 25.8
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 4.9e-11 73.9 442 24.4
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 6.4e-11 73.6 142 34.5
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 6.4e-11 73.6 444 24.5
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 1.1e-10 72.8 443 23.9
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 1.1e-10 72.8 163 30.7
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 1.4e-10 72.4 447 23.9
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 1.4e-10 72.4 442 23.1
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 1.9e-10 72.0 595 23.0
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 2.4e-10 71.6 433 22.6
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 2.4e-10 71.6 452 23.5
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 2.4e-10 71.6 551 23.2
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 2.4e-10 71.6 414 24.4
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 3.2e-10 71.2 596 22.7
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 3.2e-10 71.2 166 30.1
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 4.1e-10 70.9 415 22.4
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 5.4e-10 70.5 447 23.3
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 5.4e-10 70.5 417 24.0
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.2e-09 69.3 162 29.0
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 1.2e-09 69.3 607 22.4
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.2e-09 69.3 192 27.6
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 2.7e-09 68.2 434 22.8
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 3.5e-09 67.8 456 25.0
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 7.8e-09 66.6 106 38.7
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 1.0e-08 66.2 163 28.8
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 1.0e-08 66.2 114 33.3
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 1.7e-08 65.5 450 22.4
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 3.0e-08 64.7 621 22.1
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 3.0e-08 64.7 618 22.5
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 1.1e-07 62.8 94 37.2
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.1e-06 58.5 94 36.2


User provided reference genes

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