Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 3880.9 1959 100.0
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.5e-50 206.8 379 35.6
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 1.5e-50 206.8 379 35.6
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 2.5e-50 206.1 435 33.3
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 2.5e-50 206.1 346 37.3
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 4.3e-50 205.3 377 35.8
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 2.1e-49 203.0 371 36.9
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 2.8e-49 202.6 386 35.2
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 8.1e-49 201.1 352 37.5
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 8.1e-49 201.1 376 35.6
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.1e-48 200.7 427 33.3
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 1.4e-48 200.3 407 33.7
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 3.1e-48 199.1 406 34.7
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 4.0e-48 198.7 452 31.9
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 1.2e-47 197.2 384 34.6
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 1.5e-47 196.8 351 36.8
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 2.0e-47 196.4 411 35.0
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 2.6e-47 196.1 408 34.1
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 4.4e-47 195.3 354 35.9
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 9.9e-47 194.1 391 34.8
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 2.2e-46 193.0 352 35.8
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 2.9e-46 192.6 374 35.0
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 3.8e-46 192.2 363 36.4
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 3.8e-46 192.2 371 34.5
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 3.8e-46 192.2 354 36.2
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 3.8e-46 192.2 365 36.2
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 4.9e-46 191.8 390 34.4
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 4.9e-46 191.8 357 35.0
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 4.9e-46 191.8 373 34.9
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 6.4e-46 191.4 381 35.7
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 6.4e-46 191.4 356 35.7
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 6.4e-46 191.4 372 35.2
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 8.4e-46 191.0 368 35.1
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 8.4e-46 191.0 371 35.0
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 1.1e-45 190.7 394 33.2
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 1.1e-45 190.7 383 35.0
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 1.4e-45 190.3 813 25.5
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 1.9e-45 189.9 404 33.9
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 2.4e-45 189.5 390 33.8
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 3.2e-45 189.1 393 35.6
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 3.2e-45 189.1 391 35.0
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 4.2e-45 188.7 390 33.6
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 9.3e-45 187.6 374 34.5
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 9.3e-45 187.6 374 34.2
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.2e-44 187.2 399 34.1
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 1.2e-44 187.2 375 33.9
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 1.2e-44 187.2 398 33.9
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 1.2e-44 187.2 354 35.6
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 1.2e-44 187.2 819 26.4
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 1.2e-44 187.2 378 33.9
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 1.6e-44 186.8 356 34.6
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 1.6e-44 186.8 392 33.4
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 2.1e-44 186.4 397 34.0
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 2.1e-44 186.4 382 34.8
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 2.7e-44 186.0 399 34.6
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 2.7e-44 186.0 422 32.0
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 3.5e-44 185.7 382 32.7
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 3.5e-44 185.7 366 34.7
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 4.6e-44 185.3 377 35.8
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 4.6e-44 185.3 399 34.6
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 4.6e-44 185.3 399 34.8
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 4.6e-44 185.3 382 32.7
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 7.8e-44 184.5 374 32.9
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 7.8e-44 184.5 394 34.5
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 7.8e-44 184.5 390 33.3
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 1.3e-43 183.7 399 32.1
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 1.3e-43 183.7 384 33.3
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 3.0e-43 182.6 399 34.3
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 3.9e-43 182.2 400 32.5
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 3.9e-43 182.2 383 32.6
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 1.1e-42 180.6 415 32.5
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 1.5e-42 180.3 438 32.2
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 2.5e-42 179.5 378 35.4
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 4.3e-42 178.7 376 33.8
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 9.6e-42 177.6 373 34.0
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 1.3e-41 177.2 434 31.8
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 1.3e-41 177.2 378 33.3
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 1.3e-41 177.2 381 33.3
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.6e-41 176.8 926 24.7
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 1.6e-41 176.8 333 33.3
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 1.6e-41 176.8 437 31.4
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 1.6e-41 176.8 373 34.6
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 2.1e-41 176.4 375 33.1
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 2.8e-41 176.0 392 31.9
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.8e-41 176.0 358 33.8
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 3.6e-41 175.6 386 32.1
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 3.6e-41 175.6 406 31.0
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 6.2e-41 174.9 790 24.4
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 8.1e-41 174.5 437 30.2
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 1.4e-40 173.7 432 31.7
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.4e-40 173.7 361 34.3
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 2.4e-40 172.9 378 33.3
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 4.0e-40 172.2 380 33.2
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 5.3e-40 171.8 439 31.4
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 6.9e-40 171.4 421 29.2
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 1.2e-39 170.6 486 31.1
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 2.0e-39 169.9 356 33.7
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 2.6e-39 169.5 380 33.4
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 2.6e-39 169.5 360 33.6
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 2.6e-39 169.5 360 33.6
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 1.7e-38 166.8 387 32.6
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 1.7e-38 166.8 453 29.8
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 2.2e-38 166.4 361 33.0
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 2.9e-38 166.0 341 34.6
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 8.4e-38 164.5 339 33.3
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 2.4e-37 162.9 1030 23.1
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 1.6e-36 160.2 360 32.5
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 2.7e-36 159.5 399 31.1
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 6.0e-36 158.3 462 28.6
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 4.3e-34 152.1 370 32.2
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 2.4e-32 146.4 252 34.1
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 5.3e-32 145.2 344 31.1
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 7.6e-31 141.4 390 29.2
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 1.3e-30 140.6 295 35.3
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 1.7e-30 140.2 340 31.2
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 8.4e-30 137.9 478 25.7
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 4.2e-29 135.6 220 36.8
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 4.6e-28 132.1 364 28.8
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 7.9e-28 131.3 219 34.7
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 6.7e-27 128.3 391 29.4
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 8.7e-27 127.9 237 34.2
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.3e-26 125.9 241 31.5
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.1e-25 123.2 219 32.9
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.3e-24 118.6 179 36.9
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 5.8e-23 115.2 169 36.7
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 3.2e-13 82.8 284 26.4
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.3e-11 77.4 320 25.9
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 7.7e-07 61.6 124 31.5


User provided reference genes

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