Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.0e-99 366.7 182 100.0
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 4.2e-16 89.0 176 30.7
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 7.1e-16 88.2 174 29.3
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 1.2e-15 87.4 174 29.3
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 2.7e-15 86.3 176 29.5
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 2.7e-15 86.3 174 29.9
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.8e-14 83.6 178 28.1
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 8.7e-14 81.3 174 29.9
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.1e-13 80.9 175 29.1
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.1e-13 80.9 174 28.7
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 1.1e-13 80.9 176 30.1
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.1e-13 80.9 176 30.1
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.5e-13 80.5 181 28.2
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 1.9e-13 80.1 174 29.9
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.5e-13 79.7 175 29.7
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.5e-13 79.7 174 27.0
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 2.5e-13 79.7 176 30.7
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 2.5e-13 79.7 174 27.0
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 3.3e-13 79.3 174 28.2
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 4.3e-13 79.0 177 29.4
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 7.4e-13 78.2 174 30.5
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 7.4e-13 78.2 177 29.9
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 9.6e-13 77.8 175 30.3
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 9.6e-13 77.8 175 28.0
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 2.1e-12 76.6 174 27.6
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 2.8e-12 76.3 174 28.7
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.8e-12 76.3 174 28.7
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 2.8e-12 76.3 177 27.1
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.6e-12 75.9 176 28.4
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 3.6e-12 75.9 174 27.6
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 3.6e-12 75.9 177 30.5
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 3.6e-12 75.9 174 28.2
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 3.6e-12 75.9 175 27.4
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 3.6e-12 75.9 177 27.1
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 4.8e-12 75.5 175 28.0
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.8e-12 75.5 174 28.7
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 4.8e-12 75.5 174 29.3
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 4.8e-12 75.5 174 29.3
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 4.8e-12 75.5 174 29.3
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 4.8e-12 75.5 177 26.6
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 6.2e-12 75.1 177 29.9
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 6.2e-12 75.1 174 28.7
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 8.1e-12 74.7 174 28.2
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 8.1e-12 74.7 176 25.6
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 8.1e-12 74.7 177 28.8
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 1.1e-11 74.3 174 27.6
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.1e-11 74.3 175 28.0
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.1e-11 74.3 174 28.2
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.4e-11 73.9 177 27.1
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.4e-11 73.9 174 28.2
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.4e-11 73.9 175 28.0
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 1.4e-11 73.9 175 27.4
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.8e-11 73.6 126 32.5
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.8e-11 73.6 175 28.0
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 2.4e-11 73.2 174 27.0
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 2.4e-11 73.2 177 28.8
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 2.4e-11 73.2 174 27.6
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 3.1e-11 72.8 177 27.7
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 4.0e-11 72.4 175 27.4
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 5.3e-11 72.0 126 31.0
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 6.9e-11 71.6 174 28.2
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 6.9e-11 71.6 175 26.9
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 6.9e-11 71.6 171 28.1
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 9.0e-11 71.2 174 28.2
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 9.0e-11 71.2 126 31.0
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 9.0e-11 71.2 127 32.3
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 9.0e-11 71.2 174 26.4
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 9.0e-11 71.2 180 26.7
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.2e-10 70.9 174 28.7
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 1.2e-10 70.9 174 28.2
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.2e-10 70.9 177 29.9
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.2e-10 70.9 175 26.9
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 1.2e-10 70.9 174 27.0
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 2.0e-10 70.1 175 27.4
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 2.0e-10 70.1 174 27.6
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.0e-10 70.1 143 28.7
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 2.0e-10 70.1 178 26.4
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 2.6e-10 69.7 176 30.1
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 2.6e-10 69.7 175 27.4
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 3.4e-10 69.3 174 28.7
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.4e-10 69.3 174 25.9
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 4.5e-10 68.9 174 28.7
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 4.5e-10 68.9 174 28.7
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 4.5e-10 68.9 175 26.9
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 4.5e-10 68.9 174 27.0
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 4.5e-10 68.9 177 26.6
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 5.8e-10 68.6 174 27.0
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 5.8e-10 68.6 175 26.3
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.3e-09 67.4 177 24.9
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.7e-09 67.0 126 30.2
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.2e-09 66.6 175 28.0
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 2.2e-09 66.6 126 30.2
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 2.2e-09 66.6 175 26.9
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 2.2e-09 66.6 175 26.9
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 6.4e-09 65.1 177 27.1
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 8.4e-09 64.7 179 26.3
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 2.4e-08 63.2 129 30.2
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 3.2e-08 62.8 179 26.8
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 3.2e-08 62.8 106 31.1
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 3.2e-08 62.8 129 29.5
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 3.5e-07 59.3 177 24.9
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 7.9e-07 58.2 126 28.6
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.0e-06 57.8 145 27.6
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 3.0e-06 56.2 106 30.2


User provided reference genes

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