Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 2.4e-306 1054.7 537 100.0
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 1.9e-40 171.4 301 41.2
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 1.3e-38 165.2 420 34.8
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 2.3e-38 164.5 301 38.5
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 3.9e-38 163.7 324 37.3
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 8.7e-38 162.5 296 39.9
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 4.3e-37 160.2 317 37.5
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 5.7e-37 159.8 331 36.3
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 7.4e-37 159.5 301 37.2
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 9.7e-37 159.1 296 37.5
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 1.3e-36 158.7 301 38.2
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 1.3e-36 158.7 319 36.7
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 1.6e-36 158.3 296 38.2
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 1.6e-36 158.3 296 38.2
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 2.2e-36 157.9 316 37.0
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 2.8e-36 157.5 320 36.2
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 2.8e-36 157.5 296 38.5
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 3.7e-36 157.1 328 37.2
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 4.8e-36 156.8 330 35.5
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 4.8e-36 156.8 391 33.0
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 4.8e-36 156.8 296 38.5
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 1.1e-35 155.6 330 35.8
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 1.1e-35 155.6 330 35.8
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 1.1e-35 155.6 345 34.5
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 1.1e-35 155.6 331 35.3
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 1.1e-35 155.6 296 36.8
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 1.4e-35 155.2 296 37.5
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.4e-35 155.2 330 35.8
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 1.4e-35 155.2 297 38.7
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 1.4e-35 155.2 327 36.1
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 1.8e-35 154.8 296 37.2
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.8e-35 154.8 296 38.2
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 2.4e-35 154.5 301 37.2
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 2.4e-35 154.5 296 37.8
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 3.1e-35 154.1 296 38.2
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 3.1e-35 154.1 296 38.2
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 3.1e-35 154.1 296 37.8
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 5.3e-35 153.3 326 35.9
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 5.3e-35 153.3 296 37.8
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 5.3e-35 153.3 368 34.5
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 6.9e-35 152.9 372 34.1
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 6.9e-35 152.9 293 37.9
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 6.9e-35 152.9 296 37.5
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 9.1e-35 152.5 330 35.5
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 9.1e-35 152.5 330 35.5
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 9.1e-35 152.5 248 41.5
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 9.1e-35 152.5 194 44.8
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 1.2e-34 152.1 332 35.5
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.2e-34 152.1 356 33.4
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 1.2e-34 152.1 296 37.5
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.5e-34 151.8 321 36.1
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 1.5e-34 151.8 330 35.5
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 1.5e-34 151.8 469 32.2
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 2.6e-34 151.0 355 33.8
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 2.6e-34 151.0 305 37.0
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 2.6e-34 151.0 326 35.9
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 4.5e-34 150.2 334 35.3
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 5.9e-34 149.8 365 34.0
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 5.9e-34 149.8 331 36.0
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 5.9e-34 149.8 322 36.6
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 7.7e-34 149.4 341 34.0
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 7.7e-34 149.4 347 35.4
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 7.7e-34 149.4 296 37.5
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 7.7e-34 149.4 296 36.8
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 7.7e-34 149.4 331 35.0
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 7.7e-34 149.4 301 37.2
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 7.7e-34 149.4 309 36.6
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 1.0e-33 149.1 366 34.4
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.0e-33 149.1 296 36.5
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 1.3e-33 148.7 296 36.8
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.3e-33 148.7 360 33.9
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 1.3e-33 148.7 296 36.1
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 1.3e-33 148.7 304 35.9
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.7e-33 148.3 390 33.6
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 1.7e-33 148.3 296 37.5
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 1.7e-33 148.3 296 36.1
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 2.2e-33 147.9 343 35.3
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 2.2e-33 147.9 327 35.8
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 2.9e-33 147.5 357 35.0
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.8e-33 147.1 289 37.0
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 3.8e-33 147.1 341 35.8
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 3.8e-33 147.1 341 35.8
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 5.0e-33 146.7 321 35.8
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 5.0e-33 146.7 338 35.2
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 5.0e-33 146.7 368 34.5
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 5.0e-33 146.7 304 35.5
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 5.0e-33 146.7 407 32.2
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 6.5e-33 146.4 251 38.2
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 1.1e-32 145.6 246 40.2
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 1.1e-32 145.6 257 37.0
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.4e-32 145.2 284 37.3
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 1.4e-32 145.2 322 33.5
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 1.9e-32 144.8 296 35.8
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 2.5e-32 144.4 326 34.7
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 4.2e-32 143.7 367 33.8
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 4.2e-32 143.7 296 36.5
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 4.2e-32 143.7 331 34.7
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 5.5e-32 143.3 324 34.6
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 9.4e-32 142.5 239 39.3
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 9.4e-32 142.5 296 35.1
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 9.4e-32 142.5 296 35.5
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 1.2e-31 142.1 296 36.1
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 1.6e-31 141.7 296 34.8
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 2.1e-31 141.4 288 35.8
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 2.1e-31 141.4 396 32.3
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 3.6e-31 140.6 359 33.1
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 3.6e-31 140.6 249 37.8
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 6.1e-31 139.8 318 33.6
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 6.1e-31 139.8 266 36.8
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 2.3e-30 137.9 395 31.9
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 6.7e-30 136.3 296 35.1
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 8.8e-30 136.0 332 33.4
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.3e-28 132.1 276 36.2
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 1.3e-28 132.1 364 32.1
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 4.8e-28 130.2 220 39.1
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 2.4e-27 127.9 201 42.3
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 9.1e-27 125.9 301 33.6
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 8.5e-25 119.4 164 43.3
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 8.5e-25 119.4 164 43.3
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 4.7e-23 113.6 188 37.8
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 7.9e-23 112.8 188 38.8
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 3.9e-22 110.5 188 37.2
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 1.4e-19 102.1 205 39.0
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 4.5e-18 97.1 166 42.8
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 4.7e-15 87.0 190 36.3
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 4.0e-14 84.0 155 36.8
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 1.8e-11 75.1 113 43.4
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 1.2e-07 62.4 184 31.0
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 2.7e-07 61.2 115 34.8
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 6.8e-06 56.6 147 27.9


User provided reference genes

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