Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027209 Carpinus fangiana HOM05D002982 ORTHO05D123834 0.0e+00 2525.0 1253 100.0
Carub.0007s3438 Capsella rubella HOM05D002982 ORTHO05D003345 3.3e-11 75.5 342 24.6
SGA_v2.0_scaffold40G15634 Striga asiatica HOM05D002982 ORTHO05D003345 9.5e-11 73.9 350 25.4
Thhalv10003798m.g Eutrema salsugineum HOM05D002982 ORTHO05D003345 1.2e-10 73.6 352 23.9
HanXRQChr09g0273621 Helianthus annuus HOM05D002982 ORTHO05D003345 1.2e-10 73.6 326 27.0
BcaC03g17400 Brassica carinata HOM05D002982 ORTHO05D003345 1.6e-10 73.2 354 26.8
BcaC06g33879 Brassica carinata HOM05D002982 ORTHO05D003345 1.6e-10 73.2 347 25.1
C07p35960 Brassica napus HOM05D002982 ORTHO05D003345 1.6e-10 73.2 347 25.1
BolC7t44113H Brassica oleracea HOM05D002982 ORTHO05D003345 1.6e-10 73.2 347 25.1
AT5G41110 Arabidopsis thaliana HOM05D002982 ORTHO05D003345 2.1e-10 72.8 333 26.1
Carub.0005s0498 Capsella rubella HOM05D002982 ORTHO05D003345 2.1e-10 72.8 355 25.4
A06p41660 Brassica napus HOM05D002982 ORTHO05D003345 2.8e-10 72.4 342 25.1
BraA06t27091Z Brassica rapa HOM05D002982 ORTHO05D003345 2.8e-10 72.4 342 25.1
unitig_61.g26380 Utricularia gibba HOM05D002982 ORTHO05D003345 2.8e-10 72.4 328 24.1
CARHR147980 Cardamine hirsuta HOM05D002982 ORTHO05D003345 3.6e-10 72.0 358 24.9
Sp7g00790 Schrenkiella parvula HOM05D002982 ORTHO05D003345 6.2e-10 71.2 335 24.5
AL7G48440 Arabidopsis lyrata HOM05D002982 ORTHO05D003345 8.1e-10 70.9 344 25.0
A04p14150 Brassica napus HOM05D002076 ORTHO05D002087 1.1e-09 70.5 162 33.3
BolC2t11420H Brassica oleracea HOM05D002982 ORTHO05D003345 1.1e-09 70.5 355 26.8
Thhalv10027694m.g Eutrema salsugineum HOM05D002982 ORTHO05D003345 1.4e-09 70.1 342 25.1
Aa31LG2G5690 Aethionema arabicum HOM05D002982 ORTHO05D003345 1.8e-09 69.7 373 25.2
A02p34870 Brassica napus HOM05D002982 ORTHO05D003345 1.8e-09 69.7 354 24.3
BraA02t08494Z Brassica rapa HOM05D002982 ORTHO05D003345 1.8e-09 69.7 354 24.3
BraA04t17076Z Brassica rapa HOM05D002076 ORTHO05D002087 1.8e-09 69.7 162 33.3
unitig_0.g1258 Utricularia gibba HOM05D003078 ORTHO05D003545 1.8e-09 69.7 193 28.5
AT3G26890 Arabidopsis thaliana HOM05D002982 ORTHO05D003345 4.0e-09 68.6 352 25.0
BcaB06g27599 Brassica carinata HOM05D002076 ORTHO05D002087 4.0e-09 68.6 161 32.3
C04p48190 Brassica napus HOM05D002076 ORTHO05D002087 4.0e-09 68.6 162 32.7
BolC4t26411H Brassica oleracea HOM05D002982 ORTHO05D003345 4.0e-09 68.6 162 32.7
Cfa007187 Carpinus fangiana HOM05D002982 ORTHO05D003345 6.8e-09 67.8 251 26.7
Hund10075 Selenicereus undatus HOM05D002982 ORTHO05D003345 6.8e-09 67.8 364 23.6
BcaB07g30203 Brassica carinata HOM05D002982 ORTHO05D003345 8.9e-09 67.4 349 25.2
BcaC06g31039 Brassica carinata HOM05D002982 ORTHO05D003345 8.9e-09 67.4 342 25.1
Nn4g22202 Nelumbo nucifera HOM05D002982 ORTHO05D003345 8.9e-09 67.4 228 27.6
Sp2g16010 Schrenkiella parvula HOM05D002982 ORTHO05D003345 8.9e-09 67.4 362 24.0
C02p53450 Brassica napus HOM05D002982 ORTHO05D003345 1.2e-08 67.0 356 25.8
Gohir.A03G054900 Gossypium hirsutum HOM05D002982 ORTHO05D003345 1.2e-08 67.0 224 26.8
Dinv33300 Davidia involucrata HOM05D002982 ORTHO05D003345 2.0e-08 66.2 215 30.2
Gohir.D03G112000 Gossypium hirsutum HOM05D002982 ORTHO05D003345 2.0e-08 66.2 228 26.3
PGSC0003DMG400012026 Solanum tuberosum HOM05D002982 ORTHO05D003345 2.0e-08 66.2 328 24.1
GSVIVG01033027001 Vitis vinifera HOM05D002982 ORTHO05D003345 2.0e-08 66.2 346 25.1
ECA232G4301 Erigeron canadensis HOM05D002982 ORTHO05D003345 3.4e-08 65.5 455 24.2
Cc04_g09490 Coffea canephora HOM05D002982 ORTHO05D003345 4.4e-08 65.1 223 29.1
Lalb_Chr11g0069321 Lupinus albus HOM05D002982 ORTHO05D003345 4.4e-08 65.1 343 23.9
Sopen03g028460 Solanum pennellii HOM05D002982 ORTHO05D003345 4.4e-08 65.1 326 23.3
Actinidia36236 Actinidia chinensis HOM05D002982 ORTHO05D003345 5.8e-08 64.7 229 25.3
Atru.chr6.2624 Acer truncatum HOM05D002982 ORTHO05D003345 7.6e-08 64.3 338 24.9
Solyc03g097710.4 Solanum lycopersicum HOM05D002982 ORTHO05D003345 7.6e-08 64.3 320 23.1
Ah.11g046530 Amaranthus hybridus HOM05D002982 ORTHO05D003345 9.9e-08 63.9 200 30.5
Sc03g0005900 Simmondsia chinensis HOM05D002982 ORTHO05D003345 9.9e-08 63.9 210 30.0
Duzib205G0494 Durio zibethinus HOM05D002982 ORTHO05D003345 1.3e-07 63.5 188 26.1
Gorai.003G118300 Gossypium raimondii HOM05D002982 ORTHO05D003345 1.3e-07 63.5 228 26.3
Thecc.04G043100 Theobroma cacao HOM05D002982 ORTHO05D003345 1.3e-07 63.5 209 26.8
vmacro05986 Vaccinium macrocarpon HOM05D002982 ORTHO05D003345 1.3e-07 63.5 257 24.9
Duzib264G1039 Durio zibethinus HOM05D002982 ORTHO05D003345 1.7e-07 63.2 225 24.9
Gohir.A07G231200 Gossypium hirsutum HOM05D002982 ORTHO05D003345 1.7e-07 63.2 352 23.3
arahy.Tifrunner.gnm1.ann1.7VWR4R Arachis hypogaea HOM05D002982 ORTHO05D003345 2.2e-07 62.8 322 23.3
COL.COLO4_16681 Corchorus olitorius HOM05D002982 ORTHO05D003345 2.2e-07 62.8 189 27.0
Lj9A484T60 Lonicera japonica HOM05D002982 ORTHO05D003345 2.2e-07 62.8 321 22.4
Pp3c17_330 Physcomitrium patens HOM05D002982 ORTHO05D003345 2.2e-07 62.8 205 28.8
Actinidia18322 Actinidia chinensis HOM05D002982 ORTHO05D003345 2.9e-07 62.4 212 26.4
Ah.03g148330 Amaranthus hybridus HOM05D002982 ORTHO05D003345 2.9e-07 62.4 236 26.3
CAN.G637.62 Capsicum annuum HOM05D002982 ORTHO05D003345 2.9e-07 62.4 354 24.3
Haze_14921 Corylus avellana HOM05D002982 ORTHO05D003345 2.9e-07 62.4 244 26.6
Nn3g16339 Nelumbo nucifera HOM05D002982 ORTHO05D003345 2.9e-07 62.4 223 26.9
Potri.015G103500 Populus trichocarpa HOM05D002982 ORTHO05D003345 2.9e-07 62.4 195 27.7
SEGI_25387 Sequoiadendron giganteum HOM05D002982 ORTHO05D003345 2.9e-07 62.4 190 31.6
THA.LOC104825647 Tarenaya hassleriana HOM05D002982 ORTHO05D003345 2.9e-07 62.4 226 26.5
Thecc.03G137100 Theobroma cacao HOM05D002982 ORTHO05D003345 2.9e-07 62.4 188 26.1
CiPaw.03G004000 Carya illinoinensis HOM05D002982 ORTHO05D003345 3.8e-07 62.0 228 26.8
Zm00001eb036950 Zea mays HOM05D002982 ORTHO05D003345 3.8e-07 62.0 210 26.7
CSS0004292 Camellia sinensis var. sinensis HOM05D002982 ORTHO05D003345 4.9e-07 61.6 208 26.9
Potri.012G104200 Populus trichocarpa HOM05D002982 ORTHO05D003345 4.9e-07 61.6 237 27.0
arahy.Tifrunner.gnm1.ann1.MH3BZ3 Arachis hypogaea HOM05D002982 ORTHO05D003345 6.4e-07 61.2 319 22.9
Duzib147G0161 Durio zibethinus HOM05D002982 ORTHO05D003345 6.4e-07 61.2 229 25.3
Gohir.D04G073900 Gossypium hirsutum HOM05D002982 ORTHO05D003345 6.4e-07 61.2 240 25.4
Gorai.012G083300 Gossypium raimondii HOM05D002982 ORTHO05D003345 6.4e-07 61.2 240 25.4
Lsat_1_v5_gn_4_83620 Lactuca sativa HOM05D002982 ORTHO05D003345 6.4e-07 61.2 324 23.8
TAR622G1079 Trochodendron aralioides HOM05D002982 ORTHO05D003345 6.4e-07 61.2 190 29.5
MD17G1010000 Malus domestica HOM05D002982 ORTHO05D003345 8.4e-07 60.8 215 28.4
Prupe.5G145000 Prunus persica HOM05D002982 ORTHO05D003345 8.4e-07 60.8 188 27.1
QL10p001113 Quercus lobata HOM05D002982 ORTHO05D003345 8.4e-07 60.8 198 28.3
ATR0582G283 Amborella trichopoda HOM05D002982 ORTHO05D003345 1.1e-06 60.5 220 27.7
BcaC06g33881 Brassica carinata HOM05D002982 ORTHO05D003345 1.1e-06 60.5 180 28.9
CDE05G3294 Ceratophyllum demersum HOM05D002982 ORTHO05D003345 1.4e-06 60.1 314 26.4
Migut.F00028 Erythranthe guttata HOM05D002982 ORTHO05D003345 1.4e-06 60.1 262 24.8
Gohir.A05G335100 Gossypium hirsutum HOM05D002982 ORTHO05D003345 1.4e-06 60.1 207 26.6
DCAR_014485 Daucus carota HOM05D002982 ORTHO05D003345 1.9e-06 59.7 187 29.9
Lj1g0002944 Lotus japonicus HOM05D002982 ORTHO05D003345 1.9e-06 59.7 190 28.9
Peaxi162Scf00171g01126 Petunia axillaris HOM05D002982 ORTHO05D003345 1.9e-06 59.7 187 27.8
Rhsim10G0002900 Rhododendron simsii HOM05D002982 ORTHO05D003345 1.9e-06 59.7 226 28.3
Sc04g0000340 Simmondsia chinensis HOM05D002982 ORTHO05D003345 1.9e-06 59.7 320 24.1
TWI60G0718 Tripterygium wilfordii HOM05D002982 ORTHO05D003345 1.9e-06 59.7 78 37.2
AUR62029533 Chenopodium quinoa HOM05D002982 ORTHO05D003345 2.4e-06 59.3 260 23.8
PSO478G0665 Papaver somniferum HOM05D002982 ORTHO05D003345 2.4e-06 59.3 188 29.3
SalBow1G1963 Salvia bowleyana HOM05D002982 ORTHO05D003345 2.4e-06 59.3 192 27.1
CSS0040616 Camellia sinensis var. sinensis HOM05D002982 ORTHO05D003345 3.2e-06 58.9 208 26.0
Eucgr.H03363 Eucalyptus grandis HOM05D002982 ORTHO05D003345 3.2e-06 58.9 189 25.4
Os09g0509400 Oryza sativa ssp. japonica HOM05D002982 ORTHO05D003345 3.2e-06 58.9 221 28.1
vmacro19156 Vaccinium macrocarpon HOM05D002982 ORTHO05D003345 3.2e-06 58.9 192 28.6
HanXRQChr14g0451301 Helianthus annuus HOM05D002982 ORTHO05D003345 4.2e-06 58.5 342 26.3
Rhsim08G0194700 Rhododendron simsii HOM05D002982 ORTHO05D003345 4.2e-06 58.5 254 25.6
SGA_v2.0_scaffold253G45161 Striga asiatica HOM05D002982 ORTHO05D003345 4.2e-06 58.5 356 21.3
THA.LOC104805314 Tarenaya hassleriana HOM05D002982 ORTHO05D003345 5.4e-06 58.2 367 23.7
TPR.G21110 Trifolium pratense HOM05D002982 ORTHO05D003345 5.4e-06 58.2 210 26.7
AagrBONN_evm.TU.Sc2ySwM_368.1725 Anthoceros agrestis HOM05D002982 ORTHO05D003345 7.1e-06 57.8 64 39.1
Nitab4.5_0001451g0030 Nicotiana tabacum HOM05D002982 ORTHO05D003345 7.1e-06 57.8 355 23.1
PSO017G5996 Papaver somniferum HOM05D002982 ORTHO05D003345 7.1e-06 57.8 188 29.3
CANSAT64G1652 Cannabis sativa HOM05D002982 ORTHO05D003345 9.2e-06 57.4 230 26.5
AUR62003386 Chenopodium quinoa HOM05D002982 ORTHO05D003345 9.2e-06 57.4 344 25.9
Hma1.2p1_0168F.1_g074180 Hydrangea macrophylla HOM05D002982 ORTHO05D003345 9.2e-06 57.4 190 28.4
PSO478G2627 Papaver somniferum HOM05D002982 ORTHO05D003345 9.2e-06 57.4 238 26.5
SalBow4G1297 Salvia bowleyana HOM05D002982 ORTHO05D003345 9.2e-06 57.4 75 38.7
SalBow4G3069 Salvia bowleyana HOM05D002982 ORTHO05D003345 9.2e-06 57.4 75 38.7


User provided reference genes

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