Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 2.2e-103 379.0 196 100.0
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 4.3e-11 72.4 177 31.6
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 9.7e-11 71.2 169 31.4
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 2.2e-10 70.1 170 28.2
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 3.7e-10 69.3 170 28.2
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.1e-09 67.8 174 28.7
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.1e-09 67.8 170 27.6
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.4e-09 67.4 171 28.7
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 6.9e-09 65.1 96 38.5
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 9.1e-09 64.7 101 33.7
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.2e-08 64.3 96 36.5
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 1.5e-08 63.9 171 28.7
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.5e-08 63.9 171 28.7
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 2.0e-08 63.5 171 30.4
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 2.0e-08 63.5 171 26.9
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 2.6e-08 63.2 136 27.9
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 4.5e-08 62.4 97 36.1
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 5.9e-08 62.0 96 37.5
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 5.9e-08 62.0 96 35.4
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 5.9e-08 62.0 135 28.9
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 7.7e-08 61.6 96 34.4
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 7.7e-08 61.6 69 43.5
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 7.7e-08 61.6 104 35.6
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 7.7e-08 61.6 96 34.4
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 7.7e-08 61.6 171 28.1
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 7.7e-08 61.6 96 36.5
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 7.7e-08 61.6 96 34.4
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 7.7e-08 61.6 96 36.5
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 1.0e-07 61.2 171 28.7
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.0e-07 61.2 61 44.3
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.0e-07 61.2 96 36.5
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 1.0e-07 61.2 96 35.4
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.0e-07 61.2 61 44.3
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 1.0e-07 61.2 91 38.5
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.3e-07 60.8 96 34.4
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.3e-07 60.8 136 27.2
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.3e-07 60.8 171 28.1
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.3e-07 60.8 171 25.1
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.7e-07 60.5 103 34.0
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.7e-07 60.5 103 34.0
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 1.7e-07 60.5 171 26.9
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.7e-07 60.5 91 37.4
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.7e-07 60.5 91 37.4
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.7e-07 60.5 91 37.4
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.7e-07 60.5 171 27.5
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 2.2e-07 60.1 96 33.3
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.2e-07 60.1 91 37.4
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.2e-07 60.1 91 37.4
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 2.2e-07 60.1 136 29.4
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.2e-07 60.1 96 34.4
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 2.2e-07 60.1 96 34.4
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 2.2e-07 60.1 96 36.5
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 2.2e-07 60.1 171 25.7
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 2.9e-07 59.7 96 33.3
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 2.9e-07 59.7 96 33.3
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 2.9e-07 59.7 96 33.3
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 2.9e-07 59.7 96 33.3
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 2.9e-07 59.7 96 33.3
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 2.9e-07 59.7 96 33.3
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.9e-07 59.7 103 33.0
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.9e-07 59.7 103 33.0
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 2.9e-07 59.7 96 35.4
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 2.9e-07 59.7 61 44.3
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 3.8e-07 59.3 68 41.2
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 3.8e-07 59.3 96 33.3
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 3.8e-07 59.3 61 41.0
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 3.8e-07 59.3 91 37.4
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 3.8e-07 59.3 171 27.5
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 3.8e-07 59.3 171 26.3
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 3.8e-07 59.3 62 43.5
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 3.8e-07 59.3 91 37.4
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 5.0e-07 58.9 61 39.3
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 5.0e-07 58.9 91 35.2
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 5.0e-07 58.9 96 33.3
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 5.0e-07 58.9 96 33.3
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 5.0e-07 58.9 96 33.3
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 5.0e-07 58.9 96 33.3
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 5.0e-07 58.9 136 25.0
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 5.0e-07 58.9 171 25.1
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 5.0e-07 58.9 91 36.3
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 5.0e-07 58.9 96 33.3
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 5.0e-07 58.9 96 35.4
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 5.0e-07 58.9 171 25.7
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 5.0e-07 58.9 171 25.1
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 5.0e-07 58.9 96 33.3
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 6.5e-07 58.5 91 36.3
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 6.5e-07 58.5 96 33.3
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 6.5e-07 58.5 171 25.7
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 6.5e-07 58.5 171 25.7
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 6.5e-07 58.5 171 25.7
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 6.5e-07 58.5 96 33.3
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 6.5e-07 58.5 171 25.1
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 6.5e-07 58.5 91 37.4
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 6.5e-07 58.5 56 44.6
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 6.5e-07 58.5 171 26.9
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 8.5e-07 58.2 91 36.3
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 8.5e-07 58.2 91 35.2
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 8.5e-07 58.2 91 36.3
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 8.5e-07 58.2 91 36.3
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 8.5e-07 58.2 91 36.3
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 8.5e-07 58.2 96 35.4
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 8.5e-07 58.2 56 44.6
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 8.5e-07 58.2 61 41.0
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 1.1e-06 57.8 136 29.4
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.4e-06 57.4 91 35.2
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 1.4e-06 57.4 171 26.9
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.4e-06 57.4 136 26.5
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 1.4e-06 57.4 91 36.3
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 1.4e-06 57.4 96 33.3
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 1.4e-06 57.4 135 28.1
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.4e-06 57.4 136 27.9
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.9e-06 57.0 91 35.2
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.5e-06 56.6 91 36.3
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 2.5e-06 56.6 91 35.2
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 3.2e-06 56.2 95 34.7
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.2e-06 56.2 56 44.6
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 3.2e-06 56.2 91 35.2
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 4.2e-06 55.8 91 34.1
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 5.5e-06 55.5 91 35.2
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 5.5e-06 55.5 91 35.2
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 5.5e-06 55.5 91 35.2
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 5.5e-06 55.5 91 34.1
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 7.2e-06 55.1 136 28.7
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 7.2e-06 55.1 174 27.0
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 7.2e-06 55.1 96 34.4
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 9.4e-06 54.7 51 47.1
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 9.4e-06 54.7 91 34.1
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 9.4e-06 54.7 91 34.1
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 9.4e-06 54.7 59 42.4
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 9.4e-06 54.7 136 26.5
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 9.4e-06 54.7 174 27.0
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 9.4e-06 54.7 174 27.0


User provided reference genes

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