Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027164 Carpinus fangiana HOM05D002352 ORTHO05D003724 0.0e+00 1586.6 920 100.0
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 2.1e-55 221.9 513 32.6
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 2.3e-54 218.4 495 33.1
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 3.9e-54 217.6 511 32.3
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 8.7e-54 216.5 501 32.1
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 1.1e-53 216.1 512 31.8
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 1.5e-53 215.7 512 32.2
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 1.5e-53 215.7 512 31.6
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.5e-53 215.7 506 31.8
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.9e-53 215.3 511 32.5
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.9e-53 215.3 495 32.1
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 2.5e-53 214.9 501 32.1
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 3.3e-53 214.5 505 30.5
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 5.7e-53 213.8 558 30.3
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 5.7e-53 213.8 495 32.1
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 7.4e-53 213.4 556 30.4
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 9.7e-53 213.0 515 32.0
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.3e-52 212.6 513 32.2
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.3e-52 212.6 513 32.2
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 1.3e-52 212.6 495 32.5
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.6e-52 212.2 511 31.9
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 1.6e-52 212.2 495 32.5
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 2.8e-52 211.5 513 32.0
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 2.8e-52 211.5 558 30.3
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 3.7e-52 211.1 513 32.0
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 3.7e-52 211.1 506 31.4
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 3.7e-52 211.1 511 31.7
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 3.7e-52 211.1 547 30.7
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 3.7e-52 211.1 499 31.7
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 6.3e-52 210.3 506 31.6
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 8.2e-52 209.9 495 31.9
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 8.2e-52 209.9 500 31.4
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 8.2e-52 209.9 501 31.7
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 8.2e-52 209.9 506 31.2
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 8.2e-52 209.9 515 31.5
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 1.1e-51 209.5 512 31.1
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 1.1e-51 209.5 512 31.2
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 1.4e-51 209.1 495 31.5
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 1.4e-51 209.1 554 30.7
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 2.4e-51 208.4 499 31.1
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 2.4e-51 208.4 506 31.2
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 2.4e-51 208.4 495 32.1
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 3.1e-51 208.0 560 30.2
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 4.1e-51 207.6 495 31.5
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.1e-51 207.6 512 31.2
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 4.1e-51 207.6 506 31.6
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 4.1e-51 207.6 495 31.7
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 5.3e-51 207.2 495 31.7
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 5.3e-51 207.2 500 31.2
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 5.3e-51 207.2 501 31.3
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 6.9e-51 206.8 513 31.6
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 9.0e-51 206.5 544 30.3
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 9.0e-51 206.5 547 29.6
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 9.0e-51 206.5 561 31.0
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 9.0e-51 206.5 495 31.1
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 1.2e-50 206.1 562 30.2
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 1.2e-50 206.1 547 30.0
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.2e-50 206.1 499 31.3
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.5e-50 205.7 501 31.1
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 1.5e-50 205.7 506 31.4
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 2.6e-50 204.9 519 31.0
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 2.6e-50 204.9 495 31.5
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 2.6e-50 204.9 506 31.4
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 3.4e-50 204.5 547 30.5
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 3.4e-50 204.5 509 28.9
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 3.4e-50 204.5 506 30.6
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 5.9e-50 203.8 495 30.9
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 5.9e-50 203.8 559 30.2
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 5.9e-50 203.8 500 30.6
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 5.9e-50 203.8 495 31.1
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 7.7e-50 203.4 501 31.5
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 1.0e-49 203.0 552 29.9
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 1.3e-49 202.6 510 31.0
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 1.3e-49 202.6 510 31.0
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 1.3e-49 202.6 510 31.0
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 1.3e-49 202.6 510 31.0
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 1.7e-49 202.2 512 30.9
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 2.2e-49 201.8 495 30.1
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 2.2e-49 201.8 502 31.3
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 2.9e-49 201.4 501 30.7
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 5.0e-49 200.7 493 30.8
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 6.5e-49 200.3 495 30.9
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 6.5e-49 200.3 559 30.1
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 8.5e-49 199.9 495 30.9
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 8.5e-49 199.9 503 30.8
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 8.5e-49 199.9 508 30.1
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.1e-48 199.5 498 30.5
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 1.1e-48 199.5 560 30.0
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 1.9e-48 198.7 500 30.4
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.9e-48 198.7 552 29.0
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 3.2e-48 198.0 494 31.0
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 3.2e-48 198.0 500 30.4
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 7.2e-48 196.8 537 29.1
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 7.2e-48 196.8 524 30.3
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 2.7e-47 194.9 505 30.7
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 4.6e-47 194.1 507 31.0
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 4.6e-47 194.1 493 29.6
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 6.1e-47 193.7 485 31.5
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 7.9e-47 193.4 508 30.3
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.4e-46 192.6 546 29.7
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.9e-46 191.0 497 29.8
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 5.1e-46 190.7 504 29.8
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.5e-45 189.1 538 27.9
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.3e-45 188.0 548 28.8
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 3.3e-45 188.0 508 29.5
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.7e-45 187.2 548 28.8
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.7e-44 185.7 583 28.1
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.1e-43 181.4 528 28.6
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 5.3e-43 180.6 503 29.4
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 9.1e-43 179.9 548 29.4
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 7.7e-42 176.8 535 29.0
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 1.0e-41 176.4 511 29.4
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.0e-41 176.4 501 28.5
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.3e-41 176.0 510 28.8
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.3e-41 176.0 542 28.0
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 2.5e-40 171.8 527 29.4
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 3.2e-40 171.4 573 27.6
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 3.9e-38 164.5 406 33.0
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 8.8e-38 163.3 540 28.1
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 2.0e-37 162.2 514 29.0
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 2.2e-36 158.7 504 29.4
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 8.2e-36 156.8 365 31.0
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 1.1e-35 156.4 517 28.8
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 1.8e-35 155.6 594 25.8
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 4.5e-34 151.0 519 26.4
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 7.7e-34 150.2 506 27.7
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.3e-33 149.4 365 30.1
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.9e-33 148.3 365 30.4
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 8.5e-33 146.7 344 31.4
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.2e-28 132.1 497 26.6
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.6e-26 125.9 273 32.2
Lj1A1209T60 Lonicera japonica HOM05D002352 ORTHO05D003724 6.8e-22 110.5 230 30.9
Lalb_Chr21g0313521 Lupinus albus HOM05D002352 ORTHO05D003724 3.4e-21 108.2 231 33.8
Rhsim07G0137600 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.2e-18 99.8 261 29.9
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 3.5e-18 98.2 287 28.9
Eucgr.F03893 Eucalyptus grandis HOM05D002352 ORTHO05D003724 7.2e-16 90.5 214 32.2
Lalb_Chr21g0313511 Lupinus albus HOM05D002352 ORTHO05D003724 2.2e-12 79.0 281 25.3
Os01g0816500 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 6.3e-12 77.4 226 30.1
PRCOL_00006063 Prasinoderma coloniale HOM05D002352 ORTHO05D003724 2.9e-09 68.6 482 22.2
Lj1g0001052 Lotus japonicus HOM05D002352 ORTHO05D003724 4.3e-08 64.7 112 33.0
Medtr8g026860 Medicago truncatula HOM05D002352 ORTHO05D003724 1.6e-07 62.8 194 30.4


User provided reference genes

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