Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 5.6e-231 803.9 405 100.0
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 2.6e-18 97.4 197 31.5
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 7.6e-18 95.9 195 31.8
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 7.6e-18 95.9 197 31.5
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 9.9e-18 95.5 191 33.0
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 2.9e-17 94.0 197 31.5
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 2.9e-17 94.0 197 31.0
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 6.4e-17 92.8 197 31.0
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 8.4e-17 92.4 195 32.3
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 8.4e-17 92.4 195 30.3
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 2.4e-16 90.9 194 29.9
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 2.4e-16 90.9 157 34.4
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 9.3e-16 89.0 197 31.0
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 9.3e-16 89.0 200 30.0
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 9.3e-16 89.0 214 29.0
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 1.2e-15 88.6 220 29.1
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 1.2e-15 88.6 200 30.5
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 1.2e-15 88.6 200 30.0
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 1.6e-15 88.2 190 30.5
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 2.1e-15 87.8 213 29.6
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 2.1e-15 87.8 200 29.0
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 2.1e-15 87.8 158 31.6
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 2.7e-15 87.4 203 30.0
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 3.5e-15 87.0 207 29.5
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 3.5e-15 87.0 201 27.4
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 3.5e-15 87.0 234 26.9
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 4.6e-15 86.7 200 30.0
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 4.6e-15 86.7 198 30.3
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 7.8e-15 85.9 200 29.5
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 7.8e-15 85.9 212 28.8
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 7.8e-15 85.9 197 32.0
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 7.8e-15 85.9 223 29.6
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 1.0e-14 85.5 200 29.0
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 1.0e-14 85.5 195 29.7
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 1.0e-14 85.5 269 28.6
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 1.3e-14 85.1 200 29.5
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 1.7e-14 84.7 195 29.2
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 1.7e-14 84.7 191 31.4
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 1.7e-14 84.7 195 29.2
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 2.3e-14 84.3 206 29.6
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.3e-14 84.3 194 29.4
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 3.9e-14 83.6 195 28.7
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 3.9e-14 83.6 187 32.6
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 3.9e-14 83.6 195 28.2
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 5.1e-14 83.2 194 28.9
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 5.1e-14 83.2 202 29.7
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 5.1e-14 83.2 202 29.7
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 5.1e-14 83.2 202 27.7
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 5.1e-14 83.2 190 30.0
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 5.1e-14 83.2 196 29.1
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 5.1e-14 83.2 190 27.4
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 5.1e-14 83.2 197 30.5
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 6.6e-14 82.8 187 30.5
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 6.6e-14 82.8 195 28.7
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 8.7e-14 82.4 209 29.2
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 8.7e-14 82.4 194 27.8
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 8.7e-14 82.4 188 30.9
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 8.7e-14 82.4 200 28.0
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 8.7e-14 82.4 195 29.2
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 8.7e-14 82.4 200 27.5
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 1.1e-13 82.0 202 29.7
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 1.1e-13 82.0 190 28.9
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 1.1e-13 82.0 197 29.4
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.5e-13 81.6 198 29.3
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 1.5e-13 81.6 197 27.9
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.5e-13 81.6 195 28.2
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 1.5e-13 81.6 194 28.9
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 1.5e-13 81.6 206 24.8
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 1.9e-13 81.3 203 28.1
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 1.9e-13 81.3 209 28.7
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 1.9e-13 81.3 190 30.0
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 2.5e-13 80.9 194 27.8
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 2.5e-13 80.9 205 28.8
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 3.3e-13 80.5 186 32.3
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 3.3e-13 80.5 195 26.7
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 3.3e-13 80.5 209 28.7
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 3.3e-13 80.5 210 28.1
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 3.3e-13 80.5 197 27.9
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 3.3e-13 80.5 193 32.1
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 4.3e-13 80.1 191 30.4
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 4.3e-13 80.1 215 28.8
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 5.6e-13 79.7 196 29.6
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 5.6e-13 79.7 200 29.5
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 5.6e-13 79.7 175 28.0
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 5.6e-13 79.7 209 28.2
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 7.3e-13 79.3 195 26.7
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 7.3e-13 79.3 197 28.4
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 7.3e-13 79.3 197 28.9
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 7.3e-13 79.3 195 27.7
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 7.3e-13 79.3 190 30.0
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 9.6e-13 79.0 200 28.5
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 9.6e-13 79.0 212 28.8
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 9.6e-13 79.0 190 28.4
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 1.3e-12 78.6 209 28.2
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.3e-12 78.6 199 27.1
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 1.6e-12 78.2 194 27.3
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 1.6e-12 78.2 202 29.2
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 1.6e-12 78.2 200 29.5
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 1.6e-12 78.2 203 28.6
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 2.1e-12 77.8 195 27.7
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 2.1e-12 77.8 199 26.6
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 2.1e-12 77.8 200 26.5
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 2.8e-12 77.4 195 27.7
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 3.6e-12 77.0 202 28.2
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 3.6e-12 77.0 195 27.7
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 3.6e-12 77.0 194 26.8
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 3.6e-12 77.0 194 28.4
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 4.8e-12 76.6 199 25.6
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 4.8e-12 76.6 195 28.2
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 6.2e-12 76.3 188 28.7
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 6.2e-12 76.3 187 29.4
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 8.1e-12 75.9 195 27.2
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.4e-11 75.1 195 26.7
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 1.4e-11 75.1 217 27.6
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 1.4e-11 75.1 204 27.0
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 4.0e-11 73.6 214 24.8
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 5.3e-11 73.2 196 26.5
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 5.3e-11 73.2 223 28.3
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 6.9e-11 72.8 188 27.1
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 9.0e-11 72.4 182 28.6
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.5e-10 71.6 187 27.3
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 1.5e-10 71.6 205 26.3
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 2.0e-10 71.2 187 26.7
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 9.9e-10 68.9 208 26.9
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 3.8e-09 67.0 146 30.8
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 4.9e-09 66.6 152 25.7
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 5.4e-08 63.2 158 29.1
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 9.3e-08 62.4 90 42.2
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 1.2e-07 62.0 128 29.7
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 2.7e-07 60.8 104 35.6
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 4.6e-07 60.1 83 41.0
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 6.0e-07 59.7 195 24.1
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.8e-06 58.2 95 37.9
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 3.0e-06 57.4 150 27.3
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 5.1e-06 56.6 81 42.0
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 6.7e-06 56.2 157 26.8


User provided reference genes

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