Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 0.0e+00 1522.7 759 100.0
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 6.1e-53 213.4 582 31.4
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 6.1e-53 213.4 582 31.6
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 3.0e-52 211.1 595 32.1
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 5.2e-52 210.3 579 30.6
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 8.8e-52 209.5 573 31.8
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 2.6e-51 208.0 575 31.3
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 2.6e-51 208.0 589 30.4
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 3.4e-51 207.6 576 30.6
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 4.4e-51 207.2 588 30.3
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 7.5e-51 206.5 575 32.0
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 9.8e-51 206.1 578 31.5
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 9.8e-51 206.1 575 31.1
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 1.3e-50 205.7 577 29.6
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 1.7e-50 205.3 578 29.4
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 2.2e-50 204.9 525 32.4
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 2.2e-50 204.9 573 31.1
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 2.8e-50 204.5 581 30.5
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 2.8e-50 204.5 545 30.6
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 3.7e-50 204.1 577 30.7
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 3.7e-50 204.1 577 30.7
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 8.3e-50 203.0 589 30.1
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 3.1e-49 201.1 586 29.5
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 3.1e-49 201.1 553 32.5
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 4.1e-49 200.7 539 32.8
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 7.0e-49 199.9 577 30.2
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 1.2e-48 199.1 546 30.4
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 1.6e-48 198.7 606 27.2
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 2.0e-48 198.4 591 28.9
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 2.7e-48 198.0 585 29.7
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 3.5e-48 197.6 536 31.3
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 3.5e-48 197.6 543 30.0
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 4.5e-48 197.2 530 31.3
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 5.9e-48 196.8 585 31.1
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.0e-47 196.1 540 31.3
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 2.9e-47 194.5 522 30.5
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 3.8e-47 194.1 573 29.3
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 5.0e-47 193.7 537 31.5
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 6.5e-47 193.4 547 30.7
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 1.1e-46 192.6 570 31.1
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 3.2e-46 191.0 550 30.4
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 4.2e-46 190.7 579 29.0
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 5.5e-46 190.3 539 31.0
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 9.4e-46 189.5 545 29.5
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 9.4e-46 189.5 578 29.6
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 1.2e-45 189.1 582 29.4
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 1.2e-45 189.1 549 31.1
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 1.2e-45 189.1 674 27.7
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 2.1e-45 188.3 594 28.5
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 2.7e-45 188.0 541 31.6
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 2.7e-45 188.0 577 29.5
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 2.7e-45 188.0 595 29.4
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 6.1e-45 186.8 522 31.8
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.0e-44 186.0 539 30.8
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 1.4e-44 185.7 526 32.1
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 1.4e-44 185.7 538 28.6
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 2.3e-44 184.9 521 31.1
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 2.3e-44 184.9 537 28.9
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 3.0e-44 184.5 557 29.4
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 4.0e-44 184.1 587 28.4
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 4.0e-44 184.1 551 28.7
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 5.2e-44 183.7 550 30.4
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 5.2e-44 183.7 535 31.0
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 6.8e-44 183.3 524 30.9
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 6.8e-44 183.3 577 28.4
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 6.8e-44 183.3 524 30.7
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 1.2e-43 182.6 562 29.5
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.6e-43 181.4 542 30.4
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 2.6e-43 181.4 553 30.7
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 4.4e-43 180.6 546 30.6
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 4.4e-43 180.6 536 30.2
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 4.4e-43 180.6 543 30.8
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 5.7e-43 180.3 575 29.0
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 5.7e-43 180.3 593 30.2
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 5.7e-43 180.3 551 29.8
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 9.8e-43 179.5 522 30.5
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 3.7e-42 177.6 531 30.1
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 4.9e-42 177.2 568 29.9
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 1.4e-41 175.6 502 30.3
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 1.4e-41 175.6 544 29.4
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 4.1e-41 174.1 540 28.0
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 5.4e-41 173.7 540 27.8
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 2.0e-40 171.8 571 28.7
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 1.3e-39 169.1 534 30.0
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 6.6e-39 166.8 537 28.7
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 2.5e-38 164.9 552 28.1
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 7.2e-38 163.3 513 28.3
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.8e-37 161.4 568 27.3
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 3.6e-37 161.0 565 26.7
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 4.7e-37 160.6 565 26.5
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 2.3e-36 158.3 585 26.2
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.0e-36 157.5 426 30.5
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 4.0e-36 157.5 576 29.0
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 5.2e-36 157.1 557 29.6
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 6.8e-36 156.8 549 29.1
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 7.5e-35 153.3 542 27.9
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 8.3e-34 149.8 583 28.8
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.4e-33 148.3 267 37.1
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 7.0e-33 146.7 205 42.9
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 2.0e-32 145.2 520 27.5
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 4.6e-32 144.1 622 26.7
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 4.0e-28 131.0 523 26.6
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 5.2e-28 130.6 608 28.0
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 2.0e-27 128.6 561 27.5
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 4.9e-26 124.0 233 35.6
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.1e-25 120.9 533 26.1
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 2.0e-24 118.6 413 28.8
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 7.8e-24 116.7 420 31.2
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 3.0e-23 114.8 467 27.2
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 1.1e-22 112.8 522 25.5
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 1.9e-22 112.1 453 25.4
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 7.3e-22 110.2 471 27.2
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 4.7e-21 107.5 420 28.3
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 6.2e-21 107.1 430 27.7
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 1.8e-20 105.5 429 28.7
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.5e-19 102.4 189 36.0
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 9.8e-19 99.8 425 25.4
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 4.9e-18 97.4 191 35.6
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 2.4e-17 95.1 88 51.1
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 1.6e-16 92.4 87 48.3
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 2.1e-16 92.0 87 50.6
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 7.8e-16 90.1 381 27.3
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 3.9e-15 87.8 422 27.3
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 8.6e-15 86.7 124 37.9
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 1.5e-11 75.9 346 24.9
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 3.7e-10 71.2 68 50.0
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 1.3e-07 62.8 119 38.7
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 3.9e-07 61.2 165 31.5


User provided reference genes

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