Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026822 Carpinus fangiana HOM05D002585 ORTHO05D002917 0.0e+00 1656.7 838 100.0
Mapoly0093s0034 Marchantia polymorpha HOM05D002585 ORTHO05D002917 6.5e-48 196.8 480 31.0
Pp3c20_2470 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.9e-47 195.3 481 31.6
AagrBONN_evm.TU.Sc2ySwM_344.424 Anthoceros agrestis HOM05D002585 ORTHO05D002917 2.5e-47 194.9 479 30.1
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 2.8e-38 164.9 462 27.9
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 3.6e-38 164.5 465 28.6
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 4.7e-38 164.1 465 28.0
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 4.7e-38 164.1 465 28.6
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 6.1e-38 163.7 466 28.5
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 6.1e-38 163.7 460 28.0
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 8.0e-38 163.3 466 28.8
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 8.0e-38 163.3 475 28.4
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 2.3e-37 161.8 468 28.0
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 3.0e-37 161.4 479 27.8
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 6.8e-37 160.2 475 28.0
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 8.8e-37 159.8 462 28.8
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 2.0e-36 158.7 467 27.2
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 2.0e-36 158.7 467 28.5
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.4e-36 157.9 467 28.5
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 4.4e-36 157.5 432 28.9
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 7.5e-36 156.8 459 27.7
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 1.3e-35 156.0 474 28.1
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 1.3e-35 156.0 461 26.7
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 1.7e-35 155.6 456 28.1
Carub.0005s1971 Capsella rubella HOM05D002585 ORTHO05D002917 2.2e-35 155.2 465 28.2
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.2e-35 155.2 460 27.4
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 2.8e-35 154.8 459 27.5
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 2.8e-35 154.8 467 27.0
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 3.7e-35 154.5 475 27.2
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 3.7e-35 154.5 456 27.9
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 3.7e-35 154.5 457 27.1
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 4.9e-35 154.1 459 27.0
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 6.3e-35 153.7 464 27.2
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 6.3e-35 153.7 460 26.3
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 6.3e-35 153.7 458 26.4
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 8.3e-35 153.3 455 26.6
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 1.1e-34 152.9 456 28.1
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 1.1e-34 152.9 468 27.6
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 1.8e-34 152.1 474 27.6
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 1.8e-34 152.1 456 27.9
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.8e-34 152.1 455 26.4
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 1.8e-34 152.1 457 27.6
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.4e-34 151.8 455 26.6
SMO356G0713 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 2.4e-34 151.8 465 27.7
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 4.1e-34 151.0 474 27.6
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 4.1e-34 151.0 474 27.6
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 5.4e-34 150.6 454 26.4
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 5.4e-34 150.6 463 27.4
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 2.0e-33 148.7 471 27.6
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 2.0e-33 148.7 469 26.4
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 2.0e-33 148.7 461 27.1
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 2.7e-33 148.3 461 28.0
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 3.5e-33 147.9 463 26.8
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 3.5e-33 147.9 455 26.4
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 3.5e-33 147.9 454 26.7
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 3.5e-33 147.9 463 27.2
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 4.5e-33 147.5 459 26.8
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 4.5e-33 147.5 459 25.7
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 5.9e-33 147.1 487 25.7
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 5.9e-33 147.1 487 25.7
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 5.9e-33 147.1 457 27.1
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 5.9e-33 147.1 450 26.7
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 1.0e-32 146.4 474 27.4
Peaxi162Scf02002g00013 Petunia axillaris HOM05D002585 ORTHO05D002917 1.0e-32 146.4 407 27.3
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 1.3e-32 146.0 453 26.5
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 2.9e-32 144.8 466 26.8
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 2.9e-32 144.8 455 26.4
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 2.9e-32 144.8 450 26.2
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 2.9e-32 144.8 460 25.9
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 3.8e-32 144.4 455 26.8
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 8.6e-32 143.3 397 27.5
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 1.1e-31 142.9 484 26.4
Medtr0417s0020 Medicago truncatula HOM05D002585 ORTHO05D002917 1.5e-31 142.5 469 25.8
PRCOL_00005521 Prasinoderma coloniale HOM05D002585 ORTHO05D002917 1.5e-31 142.5 453 28.7
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 1.9e-31 142.1 455 26.8
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 2.5e-31 141.7 457 26.0
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 3.3e-31 141.4 468 25.9
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 3.3e-31 141.4 453 26.5
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 5.6e-31 140.6 453 26.3
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 5.6e-31 140.6 470 26.0
Mapoly0140s0025 Marchantia polymorpha HOM05D002585 ORTHO05D002917 7.3e-31 140.2 472 26.7
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 9.5e-31 139.8 453 26.3
MELO3C024486.2 Cucumis melo HOM05D002585 ORTHO05D002917 2.1e-30 138.7 474 25.1
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.8e-30 138.3 463 25.7
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 4.7e-30 137.5 356 29.8
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 4.7e-30 137.5 477 24.7
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 6.1e-30 137.1 460 26.1
PGSC0003DMG400028276 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.0e-29 136.3 356 29.2
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 1.0e-29 136.3 467 25.5
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 1.4e-29 136.0 460 26.1
Pp3c26_11640 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.4e-29 136.0 484 26.9
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 1.8e-29 135.6 475 26.9
CsaV3_6G040130 Cucumis sativus L. HOM05D002585 ORTHO05D002917 5.2e-29 134.0 459 25.3
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 8.9e-29 133.3 469 25.4
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 8.9e-29 133.3 485 27.0
Medtr3g035970 Medicago truncatula HOM05D002585 ORTHO05D002917 1.2e-28 132.9 460 25.4
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.2e-28 132.9 485 26.8
Lj3A991G23 Lonicera japonica HOM05D002585 ORTHO05D002917 2.0e-28 132.1 357 29.7
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 2.0e-28 132.1 454 26.9
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 2.6e-28 131.7 376 27.4
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 7.5e-28 130.2 396 26.5
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 7.5e-28 130.2 394 26.6
Peaxi162Scf00163g00216 Petunia axillaris HOM05D002585 ORTHO05D002917 1.3e-27 129.4 471 25.1
Psat6g075720 Pisum sativum HOM05D002585 ORTHO05D002917 2.2e-27 128.6 468 25.9
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 2.9e-27 128.3 256 32.4
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 2.9e-27 128.3 454 25.1
PGSC0003DMG400028171 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.9e-27 128.3 474 25.3
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 4.9e-27 127.5 466 24.5
Peaxi162Scf00837g00009 Petunia axillaris HOM05D002585 ORTHO05D002917 1.1e-26 126.3 460 25.9
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 1.1e-26 126.3 412 28.2
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 1.4e-26 125.9 461 26.0
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 2.4e-26 125.2 269 30.1
Sopen10g033020 Solanum pennellii HOM05D002585 ORTHO05D002917 3.2e-26 124.8 474 25.1
VMungo0720G3162 Vigna mungo HOM05D002585 ORTHO05D002917 3.2e-26 124.8 513 23.6
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 7.0e-26 123.6 252 31.7
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 9.2e-26 123.2 437 25.9
Medtr1g062470 Medicago truncatula HOM05D002585 ORTHO05D002917 9.2e-26 123.2 384 27.3
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 9.2e-26 123.2 514 24.5
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 1.6e-25 122.5 398 26.1
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 1.6e-25 122.5 471 24.4
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.6e-25 122.5 426 27.0
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 2.0e-25 122.1 392 26.5
Medtr1g062430 Medicago truncatula HOM05D002585 ORTHO05D002917 4.6e-25 120.9 328 28.0
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 1.0e-24 119.8 477 25.6
CAN.G1138.22 Capsicum annuum HOM05D002585 ORTHO05D002917 1.7e-24 119.0 396 26.8
Solyc10g083550.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.7e-24 119.0 414 25.1
ClCG04G009510 Citrullus lanatus HOM05D002585 ORTHO05D002917 6.6e-24 117.1 278 29.5
Psat6g071560 Pisum sativum HOM05D002585 ORTHO05D002917 3.3e-23 114.8 386 25.9
Psat6g076360 Pisum sativum HOM05D002585 ORTHO05D002917 3.6e-22 111.3 384 25.3
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 1.5e-20 105.9 270 26.7
Nitab4.5_0000217g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.0e-20 105.5 249 28.9
SHI27841 Sapria himalayana HOM05D002585 ORTHO05D002917 4.4e-20 104.4 337 26.7
Nitab4.5_0003945g0150 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.9e-19 101.7 215 29.8
Nitab4.5_0000132g0100 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.7e-19 101.3 399 26.1
Cre03.g146627 Chlamydomonas reinhardtii HOM05D002585 ORTHO05D002917 1.9e-18 99.0 500 21.6
Peaxi162Scf00110g00034 Petunia axillaris HOM05D002585 ORTHO05D002917 2.4e-18 98.6 274 27.7
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.6e-17 95.9 194 33.0
TPR.G30717 Trifolium pratense HOM05D002585 ORTHO05D002917 1.6e-17 95.9 197 31.5
Nitab4.5_0007292g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.0e-17 95.5 270 25.6
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.1e-15 89.7 397 23.7
CBR_g51525 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-15 89.4 141 34.8
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.2e-14 86.3 294 28.2
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 2.1e-14 85.5 258 25.6
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 6.2e-14 84.0 142 31.7
Solyc06g011330.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.1e-13 81.6 294 25.9
Cfa024801 Carpinus fangiana HOM05D002585 ORTHO05D002917 1.5e-12 79.3 375 24.5
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.0e-12 79.0 142 31.0
CBR_g37575 Chara braunii HOM05D002585 ORTHO05D002917 4.4e-12 77.8 258 25.2
Nitab4.5_0003388g0010 Nicotiana tabacum HOM05D002585 ORTHO05D002917 9.9e-12 76.6 144 31.2
AagrBONN_evm.TU.Sc2ySwM_228.740 Anthoceros agrestis HOM05D002585 ORTHO05D002917 1.3e-11 76.3 301 27.2
Sopen01g025450 Solanum pennellii HOM05D002585 ORTHO05D002917 9.2e-10 70.1 186 28.0
Psat6g075680 Pisum sativum HOM05D002585 ORTHO05D002917 1.6e-09 69.3 109 36.7
AagrBONN_evm.TU.Sc2ySwM_228.745 Anthoceros agrestis HOM05D002585 ORTHO05D002917 2.7e-09 68.6 196 29.1
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.3e-08 66.2 121 30.6
PGSC0003DMG403009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 3.0e-08 65.1 262 24.4
Solyc01g056450.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.8e-06 58.5 208 25.5


User provided reference genes

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