Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026809 Carpinus fangiana HOM05D005437 ORTHO05D006699 0.0e+00 1700.6 835 100.0
SMO144G0105 Selaginella moellendorffii HOM05D005437 ORTHO05D006699 7.1e-103 379.4 775 33.2
TWI39G0192 Tripterygium wilfordii HOM05D005437 ORTHO05D006699 1.1e-100 372.1 846 31.6
HanXRQChr11g0335011 Helianthus annuus HOM05D005437 ORTHO05D006699 7.3e-100 369.4 797 33.6
ECA236G0150 Erigeron canadensis HOM05D005437 ORTHO05D006699 3.6e-99 367.1 811 33.0
Gorai.002G036800 Gossypium raimondii HOM05D005437 ORTHO05D006699 1.8e-98 364.8 844 31.6
VMungo1127G0204 Vigna mungo HOM05D005437 ORTHO05D006699 3.1e-98 364.0 820 32.6
Sopen07g034660 Solanum pennellii HOM05D005437 ORTHO05D006699 4.0e-98 363.6 799 34.0
Pp3c5_23340 Physcomitrium patens HOM05D005437 ORTHO05D006699 5.3e-98 363.2 841 32.6
FAN16G0636 Fragaria x ananassa HOM05D005437 ORTHO05D006699 2.0e-97 361.3 806 32.9
Gohir.A01G039700 Gossypium hirsutum HOM05D005437 ORTHO05D006699 2.0e-97 361.3 842 31.1
FvH4_3g15600 Fragaria vesca HOM05D005437 ORTHO05D006699 3.4e-97 360.5 800 32.6
FAN11G3430 Fragaria x ananassa HOM05D005437 ORTHO05D006699 3.4e-97 360.5 800 32.6
Lsat_1_v5_gn_7_111601 Lactuca sativa HOM05D005437 ORTHO05D006699 3.4e-97 360.5 783 32.6
Solyc07g066480.3 Solanum lycopersicum HOM05D005437 ORTHO05D006699 3.4e-97 360.5 802 33.8
RcHm_v2.0_Chr5g0026221 Rosa chinensis HOM05D005437 ORTHO05D006699 4.4e-97 360.1 808 32.8
Gohir.D01G027500 Gossypium hirsutum HOM05D005437 ORTHO05D006699 5.8e-97 359.8 844 31.3
MELO3C019659.2 Cucumis melo HOM05D005437 ORTHO05D006699 7.6e-97 359.4 811 32.8
EL10Ac9g21866 Beta vulgaris HOM05D005437 ORTHO05D006699 4.9e-96 356.7 806 32.1
Os06g0670000 Oryza sativa ssp. japonica HOM05D005437 ORTHO05D006699 6.4e-96 356.3 842 31.8
Thecc.07G149800 Theobroma cacao HOM05D005437 ORTHO05D006699 1.1e-95 355.5 817 32.4
Glyma.09G002300 Glycine max HOM05D005437 ORTHO05D006699 1.9e-95 354.8 813 32.7
PSO675G2460 Papaver somniferum HOM05D005437 ORTHO05D006699 1.9e-95 354.8 806 32.6
Migut.M01548 Erythranthe guttata HOM05D005437 ORTHO05D006699 3.2e-95 354.0 796 31.4
Prupe.4G138400 Prunus persica HOM05D005437 ORTHO05D006699 4.2e-95 353.6 802 32.5
CANSAT80G2640 Cannabis sativa HOM05D005437 ORTHO05D006699 5.4e-95 353.2 799 33.4
CAN.G943.42 Capsicum annuum HOM05D005437 ORTHO05D006699 5.4e-95 353.2 798 33.6
CsaV3_6G013680 Cucumis sativus L. HOM05D005437 ORTHO05D006699 5.4e-95 353.2 794 31.9
ATR0763G170 Amborella trichopoda HOM05D005437 ORTHO05D006699 7.1e-95 352.8 834 32.6
Dinv19612 Davidia involucrata HOM05D005437 ORTHO05D006699 1.6e-94 351.7 810 32.8
Lj3g0019331 Lotus japonicus HOM05D005437 ORTHO05D006699 1.6e-94 351.7 812 31.9
SEGI_23870 Sequoiadendron giganteum HOM05D005437 ORTHO05D006699 1.6e-94 351.7 826 31.7
Peaxi162Scf00452g00721 Petunia axillaris HOM05D005437 ORTHO05D006699 2.7e-94 350.9 813 32.3
Carub.0001s1630 Capsella rubella HOM05D005437 ORTHO05D006699 3.5e-94 350.5 815 31.4
CiPaw.11G065200 Carya illinoinensis HOM05D005437 ORTHO05D006699 2.3e-93 347.8 790 32.3
Cc05_g16200 Coffea canephora HOM05D005437 ORTHO05D006699 2.3e-93 347.8 842 32.2
Thhalv10006808m.g Eutrema salsugineum HOM05D005437 ORTHO05D006699 3.9e-93 347.1 814 31.6
Manes.06G173000 Manihot esculenta HOM05D005437 ORTHO05D006699 5.1e-93 346.7 806 31.4
Sabra07G0053300 Salix brachista HOM05D005437 ORTHO05D006699 1.1e-92 345.5 839 31.1
Oeu036617.1 Olea europaea HOM05D005437 ORTHO05D006699 1.5e-92 345.1 802 32.4
Potri.007G066400 Populus trichocarpa HOM05D005437 ORTHO05D006699 1.9e-92 344.7 808 30.9
Lalb_Chr01g0008201 Lupinus albus HOM05D005437 ORTHO05D006699 2.5e-92 344.4 822 31.4
HPP92_026356 Vanilla planifolia HOM05D005437 ORTHO05D006699 2.5e-92 344.4 811 30.9
Mapoly0055s0057 Marchantia polymorpha HOM05D005437 ORTHO05D006699 3.3e-92 344.0 833 31.2
CSS0042223 Camellia sinensis var. sinensis HOM05D005437 ORTHO05D006699 5.6e-92 343.2 808 31.8
Sc20g0003070 Simmondsia chinensis HOM05D005437 ORTHO05D006699 5.6e-92 343.2 837 31.2
FAN21G1213 Fragaria x ananassa HOM05D005437 ORTHO05D006699 9.6e-92 342.4 789 32.2
THA.LOC104812356 Tarenaya hassleriana HOM05D005437 ORTHO05D006699 1.3e-91 342.0 807 32.6
PGR102G1747 Punica granatum HOM05D005437 ORTHO05D006699 1.6e-91 341.7 827 31.4
C05p14850 Brassica napus HOM05D005437 ORTHO05D006699 2.8e-91 340.9 812 31.0
TPR.G34170 Trifolium pratense HOM05D005437 ORTHO05D006699 3.6e-91 340.5 802 31.5
AagrBONN_evm.TU.Sc2ySwM_344.1621 Anthoceros agrestis HOM05D005437 ORTHO05D006699 4.8e-91 340.1 811 31.7
GSVIVG01020355001 Vitis vinifera HOM05D005437 ORTHO05D006699 4.8e-91 340.1 816 32.1
Ciclev10004324m.g Citrus clementina HOM05D005437 ORTHO05D006699 1.1e-90 339.0 820 32.2
BolC5t30200H Brassica oleracea HOM05D005437 ORTHO05D006699 1.4e-90 338.6 812 30.8
A06p12540 Brassica napus HOM05D005437 ORTHO05D006699 1.8e-90 338.2 812 30.8
Sp1g14710 Schrenkiella parvula HOM05D005437 ORTHO05D006699 2.4e-90 337.8 840 29.8
BraA06t24417Z Brassica rapa HOM05D005437 ORTHO05D006699 4.0e-90 337.0 812 30.8
Zm00001eb389990 Zea mays HOM05D005437 ORTHO05D006699 9.0e-90 335.9 844 30.5
MD05G1221200 Malus domestica HOM05D005437 ORTHO05D006699 2.6e-89 334.3 833 31.7
Psat7g228480 Pisum sativum HOM05D005437 ORTHO05D006699 4.5e-89 333.6 800 31.6
Duzib213G0844 Durio zibethinus HOM05D005437 ORTHO05D006699 1.3e-88 332.0 857 30.3
arahy.Tifrunner.gnm1.ann1.K3W397 Arachis hypogaea HOM05D005437 ORTHO05D006699 2.2e-88 331.3 804 32.0
Actinidia12783 Actinidia chinensis HOM05D005437 ORTHO05D006699 4.9e-88 330.1 808 31.3
Eucgr.F01464 Eucalyptus grandis HOM05D005437 ORTHO05D006699 1.6e-86 325.1 794 31.6
Aqoxy1G01551_Aqoxy1G01552 Aquilegia oxysepala HOM05D005437 ORTHO05D006699 2.1e-86 324.7 814 30.2
Aa31LG7G1090 Aethionema arabicum HOM05D005437 ORTHO05D006699 3.5e-86 323.9 859 30.0
AUR62016581 Chenopodium quinoa HOM05D005437 ORTHO05D006699 6.7e-85 319.7 842 31.1
Sed0015468 Sechium edule HOM05D005437 ORTHO05D006699 8.7e-85 319.3 762 32.3
COL.COLO4_36739 Corchorus olitorius HOM05D005437 ORTHO05D006699 1.4e-82 312.0 783 30.9
Zm00001eb274240 Zea mays HOM05D005437 ORTHO05D006699 4.0e-82 310.5 872 29.0
AL1G28710 Arabidopsis lyrata HOM05D005437 ORTHO05D006699 5.3e-82 310.1 782 29.9
AUR62011473 Chenopodium quinoa HOM05D005437 ORTHO05D006699 9.0e-82 309.3 768 31.6
Duzib268G1426 Durio zibethinus HOM05D005437 ORTHO05D006699 1.3e-80 305.4 815 30.4
Rhsim06G0239800 Rhododendron simsii HOM05D005437 ORTHO05D006699 4.9e-80 303.5 857 29.8
Medtr4g030930 Medicago truncatula HOM05D005437 ORTHO05D006699 1.8e-77 295.0 779 29.7
SalBow8G5394 Salvia bowleyana HOM05D005437 ORTHO05D006699 1.8e-77 295.0 790 31.1
Phvul.011G216100 Phaseolus vulgaris HOM05D005437 ORTHO05D006699 3.3e-76 290.8 639 33.2
AT1G16540 Arabidopsis thaliana HOM05D005437 ORTHO05D006699 5.6e-76 290.0 717 30.5
arahy.Tifrunner.gnm1.ann1.49XUJ3 Arachis hypogaea HOM05D005437 ORTHO05D006699 1.5e-73 282.0 757 30.8
Ca_19805_v3 Cicer arietinum L. HOM05D005437 ORTHO05D006699 2.0e-73 281.6 574 33.1
PGSC0003DMG400022125 Solanum tuberosum HOM05D005437 ORTHO05D006699 1.2e-70 272.3 616 33.1
BcaC05g25518 Brassica carinata HOM05D005437 ORTHO05D006699 3.9e-69 267.3 587 32.4
QL04p076801 Quercus lobata HOM05D005437 ORTHO05D006699 2.0e-65 255.0 483 34.2
DCAR_009644 Daucus carota HOM05D005437 ORTHO05D006699 1.1e-63 249.2 551 33.2
Nitab4.5_0002321g0070 Nicotiana tabacum HOM05D005437 ORTHO05D006699 1.1e-63 249.2 689 29.5
Hma1.2p1_0637F.1_g193450 Hydrangea macrophylla HOM05D005437 ORTHO05D006699 3.6e-62 244.2 465 35.9
FAN25G2633 Fragaria x ananassa HOM05D005437 ORTHO05D006699 3.9e-61 240.7 487 34.1
TAR626G0611 Trochodendron aralioides HOM05D005437 ORTHO05D006699 1.1e-60 239.2 484 33.5
CBR_g6363 Chara braunii HOM05D005437 ORTHO05D006699 1.7e-59 235.3 840 27.1
vmacro11674 Vaccinium macrocarpon HOM05D005437 ORTHO05D006699 2.6e-52 211.5 1064 23.9
Hma1.2p1_0637F.1_g193460 Hydrangea macrophylla HOM05D005437 ORTHO05D006699 7.7e-49 199.9 477 32.7
Cre02.g142351 Chlamydomonas reinhardtii HOM05D005437 ORTHO05D006699 3.2e-47 194.5 412 30.8
SGA_v2.0_scaffold186G40210 Striga asiatica HOM05D005437 ORTHO05D006699 2.1e-46 191.8 642 28.7
Atru.chr1.169 Acer truncatum HOM05D005437 ORTHO05D006699 3.1e-42 177.9 402 32.6
Nitab4.5_0001080g0010 Nicotiana tabacum HOM05D005437 ORTHO05D006699 2.1e-38 165.2 418 33.0
Nn7g37999 Nelumbo nucifera HOM05D005437 ORTHO05D006699 1.4e-37 162.5 389 31.6
PRCOL_00000624 Prasinoderma coloniale HOM05D005437 ORTHO05D006699 1.5e-36 159.1 768 24.9
Cpa.g.sc67.56 Carica papaya HOM05D005437 ORTHO05D006699 2.4e-34 151.8 266 33.8
unitig_748.g7633 Utricularia gibba HOM05D005437 ORTHO05D006699 2.2e-32 145.2 492 26.4
CDE02G3212 Ceratophyllum demersum HOM05D005437 ORTHO05D006699 5.0e-32 144.1 469 27.5
Atru.chr1.178 Acer truncatum HOM05D005437 ORTHO05D006699 1.1e-31 142.9 331 32.9
Nn7g37998 Nelumbo nucifera HOM05D005437 ORTHO05D006699 1.2e-30 139.4 331 32.0
MCO10G344 Micromonas commoda HOM05D005437 ORTHO05D006699 3.4e-28 131.3 504 26.0
Lj8A189G28 Lonicera japonica HOM05D005437 ORTHO05D006699 2.4e-26 125.2 194 37.1
Cre03.g152000 Chlamydomonas reinhardtii HOM05D005437 ORTHO05D006699 1.7e-24 119.0 704 22.4
PGSC0003DMG400015860 Solanum tuberosum HOM05D003109 ORTHO05D003578 3.7e-19 101.3 344 27.9
Pp3c6_25910 Physcomitrium patens HOM05D001123 ORTHO05D000966 4.9e-19 100.9 479 25.5
Migut.K00496 Erythranthe guttata HOM05D003109 ORTHO05D003578 1.4e-18 99.4 350 27.4
THA.LOC104798569 Tarenaya hassleriana HOM05D003109 ORTHO05D003578 4.1e-18 97.8 335 28.1
Sopen01g018350 Solanum pennellii HOM05D003109 ORTHO05D003578 9.2e-18 96.7 344 27.3
Nitab4.5_0001499g0020 Nicotiana tabacum HOM05D003109 ORTHO05D003578 1.6e-17 95.9 332 27.1
Lj6g0002854 Lotus japonicus HOM05D003109 ORTHO05D003578 3.5e-17 94.7 303 31.0
MBI18_g01517_MAGBIO Magnolia biondii HOM05D003109 ORTHO05D003578 3.5e-17 94.7 335 27.5
Nitab4.5_0000844g0340 Nicotiana tabacum HOM05D003109 ORTHO05D003578 4.5e-17 94.4 329 27.1
Pp3c16_23490 Physcomitrium patens HOM05D001123 ORTHO05D000966 4.5e-17 94.4 461 25.8
Nitab4.5_0011308g0030 Nicotiana tabacum HOM05D003109 ORTHO05D003578 5.9e-17 94.0 329 27.1
BcaC04g20996 Brassica carinata HOM05D003109 ORTHO05D003578 7.8e-17 93.6 346 27.7
BolC9t56516H Brassica oleracea HOM05D003109 ORTHO05D003578 7.8e-17 93.6 346 27.7
CAN.G97.16 Capsicum annuum HOM05D003109 ORTHO05D003578 7.8e-17 93.6 335 26.9
Sopen02g026500 Solanum pennellii HOM05D003109 ORTHO05D003578 7.8e-17 93.6 325 26.8
Lj8A189G30 Lonicera japonica HOM05D005437 ORTHO05D006699 1.3e-16 92.8 288 29.2
Aa31LG6G12320 Aethionema arabicum HOM05D000969 ORTHO05D000899 2.3e-16 92.0 328 26.8
PGSC0003DMG400007330 Solanum tuberosum HOM05D003109 ORTHO05D003578 2.3e-16 92.0 325 26.8
C09p36850 Brassica napus HOM05D003109 ORTHO05D003578 2.9e-16 91.7 328 27.1
ATR0763G182 Amborella trichopoda HOM05D003109 ORTHO05D003578 3.9e-16 91.3 332 26.2
A09p29000 Brassica napus HOM05D003109 ORTHO05D003578 1.1e-15 89.7 346 26.9
SGA_v2.0_scaffold341G49369 Striga asiatica HOM05D003109 ORTHO05D003578 1.1e-15 89.7 328 26.5
Aqoxy4G00011 Aquilegia oxysepala HOM05D003109 ORTHO05D003578 1.5e-15 89.4 324 27.5
BraA09t37734Z Brassica rapa HOM05D003109 ORTHO05D003578 1.5e-15 89.4 347 26.2
CAN.G809.44 Capsicum annuum HOM05D003109 ORTHO05D003578 1.9e-15 89.0 329 25.5
Cpa.g.sc30.95 Carica papaya HOM05D003109 ORTHO05D003578 1.9e-15 89.0 346 27.7
Peaxi162Scf00036g01013 Petunia axillaris HOM05D003109 ORTHO05D003578 2.5e-15 88.6 328 26.8
BolC9t55591H Brassica oleracea HOM05D003109 ORTHO05D003578 4.3e-15 87.8 349 25.5
CiPaw.10G105800 Carya illinoinensis HOM05D003109 ORTHO05D003578 4.3e-15 87.8 328 27.7
Sp6g07560 Schrenkiella parvula HOM05D003109 ORTHO05D003578 4.3e-15 87.8 328 25.9
Cc09_g04980 Coffea canephora HOM05D003109 ORTHO05D003578 5.6e-15 87.4 333 28.2
Pp3c12_9330 Physcomitrium patens HOM05D001123 ORTHO05D000966 9.5e-15 86.7 472 24.4
Lj6g0023516 Lotus japonicus HOM05D003109 ORTHO05D003578 2.8e-14 85.1 334 25.7
Pp3c4_21550 Physcomitrium patens HOM05D001123 ORTHO05D000966 4.7e-14 84.3 292 28.4
BraA09t38464Z Brassica rapa HOM05D003109 ORTHO05D003578 8.0e-14 83.6 346 26.0
Cfa001141 Carpinus fangiana HOM05D003109 ORTHO05D003578 1.0e-13 83.2 300 26.7
MSTRG.14821 Avicennia marina HOM05D003109 ORTHO05D003578 1.4e-13 82.8 334 25.4
Migut.M02018 Erythranthe guttata HOM05D003109 ORTHO05D003578 4.0e-13 81.3 334 25.1
Nitab4.5_0002321g0080 Nicotiana tabacum HOM05D005437 ORTHO05D006699 4.0e-13 81.3 119 42.0
Psat1g150920 Pisum sativum HOM05D003109 ORTHO05D003578 4.0e-13 81.3 319 24.5
SEGI_18652 Sequoiadendron giganteum HOM05D005437 ORTHO05D006699 4.0e-13 81.3 170 32.9
Cre09.g389089 Chlamydomonas reinhardtii HOM05D003109 ORTHO05D003578 1.5e-12 79.3 316 26.3
Eucgr.E04318 Eucalyptus grandis HOM05D003109 ORTHO05D003578 2.0e-12 79.0 299 26.8
Lj8A189G27 Lonicera japonica HOM05D005437 ORTHO05D006699 7.5e-12 77.0 169 33.7
Haze_08576 Corylus avellana HOM05D005437 ORTHO05D006699 2.2e-11 75.5 231 29.9
HanXRQChr10g0286421 Helianthus annuus HOM05D003109 ORTHO05D003578 2.9e-11 75.1 301 25.9
Cpa.g.sc67.58 Carica papaya HOM05D005437 ORTHO05D006699 6.4e-11 73.9 164 32.3
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 1.1e-10 73.2 324 24.1
CARHR017020 Cardamine hirsuta HOM05D005437 ORTHO05D006699 1.4e-10 72.8 233 26.2
unitig_748.g7634 Utricularia gibba HOM05D005437 ORTHO05D006699 1.9e-10 72.4 171 32.7
Medtr2g035470 Medicago truncatula HOM05D003109 ORTHO05D003578 9.2e-10 70.1 304 24.7
PSO675G0724 Papaver somniferum HOM05D005437 ORTHO05D006699 1.2e-09 69.7 130 33.8
MCO13G003 Micromonas commoda HOM05D003109 ORTHO05D003578 1.6e-09 69.3 287 26.5
Nitab4.5_0004630g0030 Nicotiana tabacum HOM05D003109 ORTHO05D003578 1.6e-09 69.3 157 32.5
AL6G51080 Arabidopsis lyrata HOM05D005437 ORTHO05D006699 2.0e-09 68.9 274 27.0
BcaB01g01432 Brassica carinata HOM05D003109 ORTHO05D003578 2.0e-09 68.9 346 24.9
Peaxi162Scf00273g01119 Petunia axillaris HOM05D003109 ORTHO05D003578 3.5e-09 68.2 196 28.6
SalBow8G1655 Salvia bowleyana HOM05D003109 ORTHO05D003578 3.0e-08 65.1 307 25.4
SHI21431 Sapria himalayana HOM05D005437 ORTHO05D002750 3.0e-08 65.1 115 33.9
Gohir.A12G224400 Gossypium hirsutum HOM05D001123 ORTHO05D000966 1.9e-07 62.4 298 26.5
Haze_08574 Corylus avellana HOM05D005437 ORTHO05D006699 4.3e-07 61.2 68 44.1
SHI21433 Sapria himalayana HOM05D000023 ORTHO05D000014 7.3e-07 60.5 81 39.5
HPP92_018084 Vanilla planifolia HOM05D005551 ORTHO05D007207 4.7e-06 57.8 395 23.3
Haze_05250 Corylus avellana HOM05D003109 ORTHO05D003578 6.2e-06 57.4 302 21.9


User provided reference genes

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