Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 3396.7 1769 100.0
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 4.2e-121 441.0 1661 24.9
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 1.6e-120 439.1 1665 25.5
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 3.0e-119 434.9 1667 24.8
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 6.9e-116 423.7 1654 25.4
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 2.0e-115 422.2 1557 24.9
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 8.5e-114 416.8 1633 24.5
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 3.2e-113 414.8 1497 25.5
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.6e-112 412.5 1629 24.8
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 2.1e-112 412.1 1581 25.6
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 2.7e-112 411.8 1596 24.5
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 1.8e-111 409.1 1630 24.1
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 2.3e-111 408.7 1663 24.6
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 5.1e-111 407.5 1633 24.6
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 1.1e-110 406.4 1631 23.3
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 1.1e-110 406.4 1610 26.1
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 1.5e-110 406.0 1646 24.0
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 4.4e-110 404.4 1609 24.3
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 4.4e-110 404.4 1618 24.0
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 5.7e-110 404.1 1470 25.0
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 7.4e-110 403.7 1665 24.2
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.3e-109 402.9 1543 24.8
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 2.2e-109 402.1 1606 23.7
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 2.2e-109 402.1 1468 25.3
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 2.8e-109 401.7 1506 25.2
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 2.8e-109 401.7 1631 24.8
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 4.8e-109 401.0 1638 23.7
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 8.2e-109 400.2 1595 24.6
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 1.4e-108 399.4 1532 24.5
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 5.3e-108 397.5 1475 25.0
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 7.0e-108 397.1 1545 24.9
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 7.0e-108 397.1 1524 24.0
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 1.5e-107 396.0 1471 24.5
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 1.5e-107 396.0 1600 24.4
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 2.0e-107 395.6 1496 26.0
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 2.6e-107 395.2 1545 24.9
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 2.6e-107 395.2 1504 24.5
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 2.6e-107 395.2 1621 25.3
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 2.6e-107 395.2 1524 24.0
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 5.9e-107 394.0 1609 24.3
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 5.9e-107 394.0 1495 24.5
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 1.0e-106 393.3 1648 24.5
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 5.0e-106 391.0 1618 23.8
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 1.4e-105 389.4 1516 24.1
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 2.5e-105 388.7 1650 23.6
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 3.2e-105 388.3 1609 24.8
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 4.2e-105 387.9 1631 23.5
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 4.2e-105 387.9 1551 24.8
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 9.4e-105 386.7 1628 25.6
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 9.4e-105 386.7 1493 24.1
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 2.7e-104 385.2 1618 23.5
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 2.7e-104 385.2 1441 24.8
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 4.7e-104 384.4 1504 25.5
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 1.0e-103 383.3 1641 23.3
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 1.8e-103 382.5 1637 24.2
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 5.2e-103 380.9 1634 23.4
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 6.7e-103 380.6 1684 24.4
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 6.7e-103 380.6 1519 23.6
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 1.5e-102 379.4 1651 23.5
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 3.3e-102 378.3 1493 24.6
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 3.3e-102 378.3 981 28.7
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 9.7e-102 376.7 1480 24.3
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 2.8e-101 375.2 908 29.6
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 2.8e-101 375.2 1395 25.9
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 4.8e-101 374.4 1600 23.7
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 1.1e-100 373.2 1709 22.8
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 2.4e-100 372.1 1624 23.0
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 4.1e-100 371.3 1554 25.5
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 5.3e-100 370.9 1628 23.8
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 2.0e-99 369.0 1540 23.5
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 4.5e-99 367.9 1081 27.2
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 2.9e-98 365.2 1505 23.4
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 4.2e-97 361.3 1022 28.1
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 5.5e-97 360.9 1495 23.3
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 7.2e-97 360.5 725 31.4
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 1.0e-95 356.7 1067 27.2
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 2.3e-95 355.5 1624 24.0
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 4.0e-95 354.8 1080 26.2
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 5.7e-94 350.9 936 28.1
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 9.7e-94 350.1 704 32.1
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 6.3e-93 347.4 1062 26.4
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 6.3e-93 347.4 723 29.9
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 3.5e-91 341.7 706 31.3
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 1.7e-90 339.3 931 26.5
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 2.2e-90 339.0 948 26.5
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 2.9e-90 338.6 885 26.4
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 2.9e-90 338.6 1775 22.0
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 5.0e-90 337.8 768 30.2
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 2.5e-89 335.5 1702 23.4
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 3.2e-89 335.1 962 26.4
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 9.4e-89 333.6 1547 22.8
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 4.7e-88 331.3 1547 22.7
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 1.4e-87 329.7 929 28.0
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 3.0e-87 328.6 776 30.0
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 2.3e-82 312.4 640 31.9
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 1.1e-81 310.1 842 31.2
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 2.5e-81 308.9 748 28.2
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.6e-72 279.6 436 35.8
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 8.9e-71 273.9 602 31.9
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 5.4e-68 264.6 1523 22.7
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 5.4e-52 211.5 1186 23.0
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 7.6e-46 191.0 269 36.8
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 4.2e-44 185.3 1091 22.7
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 1.1e-41 177.2 307 33.6
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 1.5e-38 166.8 468 25.9
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 8.4e-37 161.0 354 28.8
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 4.2e-36 158.7 601 23.6
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 3.9e-26 125.6 252 31.3
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 6.7e-26 124.8 512 24.8
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.8e-23 116.7 161 38.5
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 5.1e-10 72.0 443 20.3
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 1.1e-07 64.3 75 36.0
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 2.0e-06 60.1 216 25.9


User provided reference genes

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