Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026696 Carpinus fangiana HOM05D003804 ORTHO05D123400 2.0e-294 1015.0 497 100.0
Cfa022278 Carpinus fangiana HOM05D289219 ORTHO05D123032 7.3e-55 219.2 326 37.4
Cfa025308 Carpinus fangiana HOM05D000897 ORTHO05D126080 3.1e-13 80.9 250 27.6
ECA233G2677 Erigeron canadensis HOM05D003804 ORTHO05D004350 3.5e-09 67.4 106 34.0
HanXRQChr07g0194371 Helianthus annuus HOM05D003804 ORTHO05D004350 3.0e-08 64.3 106 33.0
HanXRQChr08g0225481 Helianthus annuus HOM05D003804 ORTHO05D004350 3.9e-08 63.9 106 31.1
Lsat_1_v5_gn_8_2841 Lactuca sativa HOM05D003804 ORTHO05D004350 5.1e-08 63.5 106 31.1
CANSAT56G0982 Cannabis sativa HOM05D003804 ORTHO05D004350 6.7e-08 63.2 207 24.6
ECA238G1424 Erigeron canadensis HOM05D003804 ORTHO05D004350 6.7e-08 63.2 215 23.7
Sed0002107 Sechium edule HOM05D003804 ORTHO05D004350 8.7e-08 62.8 140 28.6
TPR.G6978 Trifolium pratense HOM05D003804 ORTHO05D004350 1.5e-07 62.0 246 24.4
ClCG11G010310 Citrullus lanatus HOM05D003804 ORTHO05D004350 2.5e-07 61.2 140 27.1
Lj1g0028056 Lotus japonicus HOM05D003804 ORTHO05D004350 2.5e-07 61.2 142 32.4
Os02g0624400 Oryza sativa ssp. japonica HOM05D003804 ORTHO05D004350 3.3e-07 60.8 107 30.8
Sed0018274 Sechium edule HOM05D003804 ORTHO05D004350 3.3e-07 60.8 137 27.0
Carub.0006s1676 Capsella rubella HOM05D003804 ORTHO05D004350 4.3e-07 60.5 127 29.9
CsaV3_6G030950 Cucumis sativus L. HOM05D000987 ORTHO05D000831 4.3e-07 60.5 254 26.4
Aqoxy2G03639 Aquilegia oxysepala HOM05D003804 ORTHO05D004350 5.7e-07 60.1 106 30.2
Ca_09447_v3 Cicer arietinum L. HOM05D003804 ORTHO05D004350 5.7e-07 60.1 209 25.8
Glyma.03G249500 Glycine max HOM05D003804 ORTHO05D004350 5.7e-07 60.1 238 22.3
Glyma.19G247000 Glycine max HOM05D003804 ORTHO05D004350 5.7e-07 60.1 239 25.1
Sopen04g005060 Solanum pennellii HOM05D003804 ORTHO05D004350 5.7e-07 60.1 128 28.1
C03p10370 Brassica napus HOM05D003804 ORTHO05D004350 7.4e-07 59.7 106 31.1
BraA03t10215Z Brassica rapa HOM05D003804 ORTHO05D004350 7.4e-07 59.7 106 31.1
MELO3C008407.2 Cucumis melo HOM05D000987 ORTHO05D000831 7.4e-07 59.7 254 26.4
DCAR_023877 Daucus carota HOM05D003804 ORTHO05D004350 7.4e-07 59.7 137 29.2
Gohir.D13G172400 Gossypium hirsutum HOM05D003804 ORTHO05D004350 7.4e-07 59.7 215 24.2
Phvul.006G104100 Phaseolus vulgaris HOM05D003804 ORTHO05D004350 7.4e-07 59.7 106 30.2
Rhsim09G0137900 Rhododendron simsii HOM05D003804 ORTHO05D004350 7.4e-07 59.7 126 30.2
Solyc04g009920.3 Solanum lycopersicum HOM05D003804 ORTHO05D004350 7.4e-07 59.7 128 28.1
Aa31LG11G11120 Aethionema arabicum HOM05D003804 ORTHO05D004350 9.7e-07 59.3 106 30.2
arahy.Tifrunner.gnm1.ann1.A208ZV Arachis hypogaea HOM05D003804 ORTHO05D004350 9.7e-07 59.3 127 29.1
arahy.Tifrunner.gnm1.ann1.PMT11X Arachis hypogaea HOM05D003804 ORTHO05D004350 9.7e-07 59.3 127 29.1
BcaB01g04900 Brassica carinata HOM05D003804 ORTHO05D004350 9.7e-07 59.3 106 31.1
A03p08890 Brassica napus HOM05D003804 ORTHO05D004350 9.7e-07 59.3 106 31.1
BolC3t13517H Brassica oleracea HOM05D003804 ORTHO05D004350 9.7e-07 59.3 106 31.1
Ciclev10031149m.g Citrus clementina HOM05D003804 ORTHO05D004350 9.7e-07 59.3 224 23.7
Medtr7g115460 Medicago truncatula HOM05D003804 ORTHO05D004350 9.7e-07 59.3 241 24.5
Prupe.8G019600 Prunus persica HOM05D000987 ORTHO05D000831 9.7e-07 59.3 244 27.0
vmacro12859 Vaccinium macrocarpon HOM05D000987 ORTHO05D000831 9.7e-07 59.3 254 26.0
VMungo0540G0271 Vigna mungo HOM05D003804 ORTHO05D004350 9.7e-07 59.3 106 30.2
BcaC03g13603 Brassica carinata HOM05D003804 ORTHO05D004350 1.3e-06 58.9 106 31.1
BcaNung04819 Brassica carinata HOM05D003804 ORTHO05D004350 1.3e-06 58.9 215 23.3
C02p09920 Brassica napus HOM05D003804 ORTHO05D004350 1.3e-06 58.9 106 31.1
BolC2t06899H Brassica oleracea HOM05D003804 ORTHO05D004350 1.3e-06 58.9 106 31.1
CSS0006152 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 1.3e-06 58.9 106 29.2
CAN.G1609.2 Capsicum annuum HOM05D003804 ORTHO05D004350 1.3e-06 58.9 132 26.5
Glyma.20G226800 Glycine max HOM05D003804 ORTHO05D004350 1.3e-06 58.9 106 30.2
PGR004G0836 Punica granatum HOM05D003804 ORTHO05D004350 1.3e-06 58.9 252 24.2
AT5G18480 Arabidopsis thaliana HOM05D003804 ORTHO05D004350 1.6e-06 58.5 106 29.2
A02p04940 Brassica napus HOM05D003804 ORTHO05D004350 1.6e-06 58.5 106 31.1
BraA02t05453Z Brassica rapa HOM05D003804 ORTHO05D004350 1.6e-06 58.5 106 31.1
FvH4_6g01530 Fragaria vesca HOM05D003804 ORTHO05D004350 1.6e-06 58.5 107 28.0
FAN05G4636 Fragaria x ananassa HOM05D003804 ORTHO05D004350 1.6e-06 58.5 107 28.0
FAN05G4825 Fragaria x ananassa HOM05D003804 ORTHO05D004350 1.6e-06 58.5 107 28.0
FAN09G3890 Fragaria x ananassa HOM05D003804 ORTHO05D004350 1.6e-06 58.5 107 28.0
FAN14G2706 Fragaria x ananassa HOM05D003804 ORTHO05D004350 1.6e-06 58.5 107 28.0
FAN14G4672 Fragaria x ananassa HOM05D003804 ORTHO05D004350 1.6e-06 58.5 107 28.0
PGSC0003DMG400011479 Solanum tuberosum HOM05D003804 ORTHO05D004350 1.6e-06 58.5 128 27.3
TAR365G0429 Trochodendron aralioides HOM05D003804 ORTHO05D004350 1.6e-06 58.5 106 30.2
vmacro10357 Vaccinium macrocarpon HOM05D003804 ORTHO05D004350 1.6e-06 58.5 106 32.1
CARHR078510 Cardamine hirsuta HOM05D003804 ORTHO05D004350 2.2e-06 58.2 106 30.2
CDE08G1287 Ceratophyllum demersum HOM05D003804 ORTHO05D004350 2.2e-06 58.2 223 25.1
MELO3C008614.2 Cucumis melo HOM05D003804 ORTHO05D004350 2.2e-06 58.2 106 28.3
Dinv08268 Davidia involucrata HOM05D003804 ORTHO05D004350 2.2e-06 58.2 134 26.9
Gorai.013G188300 Gossypium raimondii HOM05D003804 ORTHO05D004350 2.2e-06 58.2 177 26.0
MBI07_g30495_MAGBIO Magnolia biondii HOM05D003804 ORTHO05D004350 2.2e-06 58.2 180 23.9
RcHm_v2.0_Chr3g0449231 Rosa chinensis HOM05D003804 ORTHO05D004350 2.2e-06 58.2 106 28.3
Sp6g25840 Schrenkiella parvula HOM05D003804 ORTHO05D004350 2.2e-06 58.2 106 29.2
Thecc.05G266900 Theobroma cacao HOM05D003804 ORTHO05D004350 2.2e-06 58.2 106 29.2
Carub.0003s0354 Capsella rubella HOM05D003804 ORTHO05D004350 2.8e-06 57.8 106 29.2
CsaV3_2G010010 Cucumis sativus L. HOM05D003804 ORTHO05D004350 2.8e-06 57.8 106 28.3
Eucgr.H04216 Eucalyptus grandis HOM05D003804 ORTHO05D004350 2.8e-06 57.8 106 29.2
Psat6g144120 Pisum sativum HOM05D003804 ORTHO05D004350 2.8e-06 57.8 215 24.2
TAR636G0278 Trochodendron aralioides HOM05D003804 ORTHO05D004350 2.8e-06 57.8 106 29.2
Atru.chr2.1108 Acer truncatum HOM05D003804 ORTHO05D004350 3.7e-06 57.4 219 23.7
CAN.G1465.5 Capsicum annuum HOM05D003804 ORTHO05D004350 3.7e-06 57.4 106 29.2
COL.COLO4_15533 Corchorus olitorius HOM05D003804 ORTHO05D004350 3.7e-06 57.4 106 28.3
Dinv14606 Davidia involucrata HOM05D003804 ORTHO05D004350 3.7e-06 57.4 134 27.6
Duzib177G0700 Durio zibethinus HOM05D003804 ORTHO05D004350 3.7e-06 57.4 106 29.2
Migut.L00898 Erythranthe guttata HOM05D000987 ORTHO05D000831 3.7e-06 57.4 256 27.0
Thhalv10013196m.g Eutrema salsugineum HOM05D003804 ORTHO05D004350 3.7e-06 57.4 106 29.2
Thhalv10020458m.g Eutrema salsugineum HOM05D003804 ORTHO05D004350 3.7e-06 57.4 106 32.1
Nitab4.5_0003768g0060 Nicotiana tabacum HOM05D003804 ORTHO05D004350 3.7e-06 57.4 106 29.2
Phvul.007G116100 Phaseolus vulgaris HOM05D003804 ORTHO05D004350 3.7e-06 57.4 106 29.2
Potri.013G049100 Populus trichocarpa HOM05D003804 ORTHO05D004350 3.7e-06 57.4 106 29.2
Sabra13G0045400 Salix brachista HOM05D003804 ORTHO05D004350 3.7e-06 57.4 106 29.2
Sp3g03220 Schrenkiella parvula HOM05D003804 ORTHO05D004350 3.7e-06 57.4 106 29.2
VMungo0720G0320 Vigna mungo HOM05D003804 ORTHO05D004350 3.7e-06 57.4 106 29.2
GSVIVG01023535001 Vitis vinifera HOM05D003804 ORTHO05D004350 3.7e-06 57.4 106 29.2
MSTRG.27378 Avicennia marina HOM05D003804 ORTHO05D004350 4.8e-06 57.0 106 28.3
Duzib106G1801 Durio zibethinus HOM05D003804 ORTHO05D004350 4.8e-06 57.0 177 24.3
Migut.H00742 Erythranthe guttata HOM05D000987 ORTHO05D000831 4.8e-06 57.0 241 26.6
FAN24G3233 Fragaria x ananassa HOM05D000987 ORTHO05D000831 4.8e-06 57.0 244 26.6
Gohir.A13G161600 Gossypium hirsutum HOM05D003804 ORTHO05D004350 4.8e-06 57.0 177 25.4
MD10G1015900 Malus domestica HOM05D000987 ORTHO05D000831 4.8e-06 57.0 240 26.7
Psat6g039920 Pisum sativum HOM05D000987 ORTHO05D000831 4.8e-06 57.0 241 26.1
Prupe.6G352300 Prunus persica HOM05D003804 ORTHO05D004350 4.8e-06 57.0 106 29.2
RcHm_v2.0_Chr6g0277081 Rosa chinensis HOM05D000987 ORTHO05D000831 4.8e-06 57.0 244 26.2
Actinidia40003 Actinidia chinensis HOM05D003804 ORTHO05D004350 6.3e-06 56.6 106 28.3
Aa31LG5G14820 Aethionema arabicum HOM05D003804 ORTHO05D004350 6.3e-06 56.6 106 29.2
BcaB05g23331 Brassica carinata HOM05D003804 ORTHO05D004350 6.3e-06 56.6 106 29.2
CARHR194530 Cardamine hirsuta HOM05D003804 ORTHO05D004350 6.3e-06 56.6 106 28.3
CBR_g39922 Chara braunii HOM05D000897 ORTHO05D000716 6.3e-06 56.6 267 25.8
Ca_10028_v3 Cicer arietinum L. HOM05D003804 ORTHO05D004350 6.3e-06 56.6 207 24.6
Cc02_g08970 Coffea canephora HOM05D003804 ORTHO05D004350 6.3e-06 56.6 106 29.2
FAN20G0454 Fragaria x ananassa HOM05D000987 ORTHO05D000831 6.3e-06 56.6 244 26.2
Nitab4.5_0000687g0070 Nicotiana tabacum HOM05D006502 ORTHO05D004350 6.3e-06 56.6 106 28.3
Nitab4.5_0001372g0080 Nicotiana tabacum HOM05D003804 ORTHO05D004350 6.3e-06 56.6 106 28.3
Peaxi162Scf00135g00416 Petunia axillaris HOM05D003804 ORTHO05D004350 6.3e-06 56.6 106 28.3
Sed0013655 Sechium edule HOM05D000987 ORTHO05D000831 6.3e-06 56.6 254 25.6
SMO364G0002 Selaginella moellendorffii HOM05D003804 ORTHO05D004350 6.3e-06 56.6 221 24.0
TWI60G0892 Tripterygium wilfordii HOM05D003804 ORTHO05D004350 6.3e-06 56.6 127 26.8
AL6G29740 Arabidopsis lyrata HOM05D003804 ORTHO05D004350 8.2e-06 56.2 106 28.3
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 8.2e-06 56.2 254 24.8
Cfa006383 Carpinus fangiana HOM05D003804 ORTHO05D004350 8.2e-06 56.2 106 29.2
Oeu044122.1 Olea europaea HOM05D000987 ORTHO05D000831 8.2e-06 56.2 248 25.8
Oeu044127.1 Olea europaea HOM05D000987 ORTHO05D000831 8.2e-06 56.2 248 25.8
PGSC0003DMG400023500 Solanum tuberosum HOM05D003804 ORTHO05D004350 8.2e-06 56.2 106 28.3


User provided reference genes

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