Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 0.0e+00 1796.6 934 100.0
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 6.6e-49 200.3 731 28.3
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 1.9e-48 198.7 711 28.0
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 1.9e-48 198.7 802 28.7
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 3.3e-48 198.0 704 29.0
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 5.6e-48 197.2 715 28.7
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 2.8e-47 194.9 806 27.4
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 2.8e-47 194.9 705 29.2
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 8.0e-47 193.4 709 29.2
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 1.8e-46 192.2 770 28.1
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 3.1e-46 191.4 709 28.3
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 3.1e-46 191.4 707 28.7
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 3.1e-46 191.4 715 28.0
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 3.1e-46 191.4 743 28.7
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 4.0e-46 191.0 767 27.6
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 5.2e-46 190.7 784 27.6
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 8.9e-46 189.9 709 28.9
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 2.0e-45 188.7 714 28.0
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 2.0e-45 188.7 789 28.0
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 2.6e-45 188.3 713 28.9
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 4.4e-45 187.6 716 27.7
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 4.4e-45 187.6 799 26.9
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 4.4e-45 187.6 715 29.9
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 5.8e-45 187.2 710 28.5
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 5.8e-45 187.2 709 27.9
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 7.5e-45 186.8 754 27.6
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 7.5e-45 186.8 728 27.2
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 9.8e-45 186.4 714 27.9
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 9.8e-45 186.4 700 28.0
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 9.8e-45 186.4 729 27.4
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 1.7e-44 185.7 787 27.3
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 2.9e-44 184.9 725 27.4
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.7e-44 184.5 728 26.8
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 3.7e-44 184.5 703 27.6
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 4.9e-44 184.1 714 28.0
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 6.4e-44 183.7 713 26.6
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 8.3e-44 183.3 727 27.4
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 1.1e-43 183.0 807 27.1
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.1e-43 183.0 716 27.5
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.1e-43 183.0 722 28.0
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 1.4e-43 182.6 725 27.2
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.4e-43 182.6 728 26.9
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 1.9e-43 182.2 713 27.5
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 5.4e-43 180.6 722 27.8
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 5.4e-43 180.6 700 28.6
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 7.1e-43 180.3 773 27.2
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 7.1e-43 180.3 718 28.0
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 7.1e-43 180.3 707 27.3
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 1.6e-42 179.1 701 28.4
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 2.1e-42 178.7 710 28.0
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 2.1e-42 178.7 712 27.2
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 2.1e-42 178.7 708 27.3
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 3.5e-42 177.9 710 27.5
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 4.6e-42 177.6 726 27.4
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 6.0e-42 177.2 721 28.0
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 6.0e-42 177.2 704 27.6
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 6.0e-42 177.2 718 28.4
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 7.8e-42 176.8 707 28.1
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 7.8e-42 176.8 722 27.4
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 7.8e-42 176.8 710 26.9
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 1.0e-41 176.4 780 27.1
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 1.3e-41 176.0 718 28.3
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 1.7e-41 175.6 747 25.4
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 1.7e-41 175.6 764 27.1
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 2.3e-41 175.3 717 27.2
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 3.0e-41 174.9 714 27.5
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 3.0e-41 174.9 702 27.1
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 3.0e-41 174.9 705 27.9
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 3.9e-41 174.5 701 27.1
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 5.1e-41 174.1 769 26.8
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 6.6e-41 173.7 805 25.2
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 6.6e-41 173.7 707 27.4
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 8.6e-41 173.3 714 27.7
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 8.6e-41 173.3 728 27.2
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 1.1e-40 172.9 705 27.1
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 1.1e-40 172.9 811 27.6
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 1.5e-40 172.6 784 25.8
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 1.9e-40 172.2 715 27.1
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 2.5e-40 171.8 718 26.0
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 3.3e-40 171.4 717 26.6
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 4.3e-40 171.0 773 26.4
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 4.3e-40 171.0 702 28.8
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 5.6e-40 170.6 716 27.0
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 5.6e-40 170.6 769 26.7
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 5.6e-40 170.6 708 27.3
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 1.2e-39 169.5 708 26.8
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 1.6e-39 169.1 714 27.6
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 1.6e-39 169.1 710 26.9
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.8e-39 168.3 723 26.0
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 3.6e-39 167.9 849 24.6
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 8.1e-39 166.8 760 26.4
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 1.1e-38 166.4 771 25.6
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 1.1e-38 166.4 723 25.9
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 1.1e-38 166.4 707 26.7
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.4e-38 166.0 727 26.3
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 1.4e-38 166.0 716 27.5
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 3.1e-38 164.9 710 25.9
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 3.1e-38 164.9 708 27.8
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 4.0e-38 164.5 715 26.4
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 4.0e-38 164.5 705 27.4
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 1.2e-37 162.9 724 26.8
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 2.0e-37 162.2 722 26.2
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 2.0e-37 162.2 795 25.4
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 3.4e-37 161.4 711 26.4
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 5.8e-37 160.6 699 27.5
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 5.8e-37 160.6 720 26.0
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 1.3e-36 159.5 754 24.9
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 1.7e-36 159.1 732 26.4
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 1.7e-36 159.1 742 27.5
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 2.9e-36 158.3 716 25.3
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 3.7e-36 157.9 717 26.2
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 8.3e-36 156.8 695 27.6
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 1.9e-35 155.6 722 26.6
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 1.9e-35 155.6 818 25.3
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 2.4e-35 155.2 719 25.2
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 9.2e-35 153.3 719 26.6
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 1.6e-34 152.5 474 29.5
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 2.7e-34 151.8 702 26.1
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 6.0e-34 150.6 703 26.6
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 7.8e-34 150.2 700 26.6
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.3e-33 149.4 552 29.7
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.3e-33 149.4 518 28.8
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 8.6e-33 146.7 593 27.3
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 8.6e-33 146.7 709 26.0
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.3e-32 144.8 721 25.4
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.3e-32 144.4 704 25.6
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 3.6e-31 141.4 732 25.3
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.4e-30 139.4 721 25.7
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 6.8e-30 137.1 846 25.1
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 8.9e-30 136.7 727 25.4
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 3.4e-29 134.8 705 26.5
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 1.7e-28 132.5 722 24.2
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 3.8e-28 131.3 495 29.5
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 8.4e-28 130.2 483 27.5
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 1.4e-27 129.4 728 25.8
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 3.2e-27 128.3 721 25.0
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 5.4e-27 127.5 184 41.3
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 7.1e-27 127.1 632 26.7
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 3.0e-25 121.7 707 24.8
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 3.0e-25 121.7 519 26.6
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 3.9e-25 121.3 271 32.8
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 1.1e-24 119.8 575 26.3
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.5e-24 119.4 317 29.7
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 1.5e-24 119.4 197 38.6
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 3.3e-24 118.2 314 31.5
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.3e-24 117.9 181 39.2
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 6.2e-23 114.0 586 25.1
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 1.4e-22 112.8 768 23.7
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 2.4e-22 112.1 185 37.3
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.7e-20 105.9 716 24.3
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.2e-18 99.8 446 25.6
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 3.5e-18 98.2 369 28.5
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 8.7e-17 93.6 441 29.3
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 1.9e-16 92.4 325 28.3
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 3.6e-15 88.2 186 35.5
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 3.4e-13 81.6 457 26.9
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 6.7e-09 67.4 71 46.5
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 8.7e-09 67.0 317 26.5
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.8e-07 62.0 124 30.6
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 4.0e-06 58.2 104 33.7


User provided reference genes

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