Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 3.4e-50 201.8 141 100.0
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.1e-15 86.3 80 55.0
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.1e-15 86.3 80 55.0
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 2.7e-15 85.9 80 56.2
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.0e-14 84.0 80 52.5
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.0e-14 84.0 80 52.5
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.4e-14 83.6 80 53.8
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.4e-14 83.6 80 53.8
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 1.4e-14 83.6 80 50.0
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 1.4e-14 83.6 80 53.8
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 1.4e-14 83.6 80 53.8
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 1.8e-14 83.2 80 53.8
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 2.3e-14 82.8 80 53.8
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 3.0e-14 82.4 80 53.8
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 3.9e-14 82.0 80 53.8
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 5.2e-14 81.6 80 51.2
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 6.7e-14 81.3 80 51.2
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 6.7e-14 81.3 80 51.2
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 6.7e-14 81.3 80 51.2
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 6.7e-14 81.3 73 54.8
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 6.7e-14 81.3 80 52.5
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 8.8e-14 80.9 80 53.8
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 8.8e-14 80.9 80 53.8
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 8.8e-14 80.9 80 52.5
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.1e-13 80.5 80 51.2
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.5e-13 80.1 77 50.6
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.5e-13 80.1 80 51.2
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 2.0e-13 79.7 80 51.2
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 2.0e-13 79.7 80 51.2
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 2.0e-13 79.7 80 51.2
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 2.0e-13 79.7 80 51.2
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 2.0e-13 79.7 80 51.2
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 2.0e-13 79.7 80 52.5
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 2.6e-13 79.3 80 51.2
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.6e-13 79.3 80 51.2
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.6e-13 79.3 80 51.2
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 2.6e-13 79.3 80 51.2
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 2.6e-13 79.3 80 50.0
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 3.3e-13 79.0 80 50.0
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 4.4e-13 78.6 73 53.4
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 4.4e-13 78.6 80 51.2
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 4.4e-13 78.6 80 50.0
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 4.4e-13 78.6 80 51.2
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 4.4e-13 78.6 80 50.0
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 4.4e-13 78.6 80 51.2
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 5.7e-13 78.2 80 51.2
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 5.7e-13 78.2 80 51.2
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 5.7e-13 78.2 80 51.2
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 5.7e-13 78.2 80 50.0
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 5.7e-13 78.2 80 51.2
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 5.7e-13 78.2 80 50.0
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 7.4e-13 77.8 80 50.0
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 7.4e-13 77.8 80 50.0
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 7.4e-13 77.8 80 51.2
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 7.4e-13 77.8 80 51.2
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 7.4e-13 77.8 80 50.0
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 9.7e-13 77.4 80 50.0
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 9.7e-13 77.4 80 48.8
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 9.7e-13 77.4 80 50.0
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 9.7e-13 77.4 79 49.4
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 9.7e-13 77.4 80 50.0
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 9.7e-13 77.4 80 50.0
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.3e-12 77.0 80 48.8
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 1.3e-12 77.0 80 50.0
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 1.3e-12 77.0 80 47.5
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 1.3e-12 77.0 80 48.8
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.3e-12 77.0 80 50.0
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.3e-12 77.0 80 50.0
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 1.7e-12 76.6 80 48.8
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.2e-12 76.3 80 50.0
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.2e-12 76.3 80 50.0
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 2.2e-12 76.3 80 48.8
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 2.2e-12 76.3 80 48.8
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 2.8e-12 75.9 80 46.2
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 2.8e-12 75.9 80 47.5
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 2.8e-12 75.9 80 48.8
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 4.8e-12 75.1 80 51.2
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 4.8e-12 75.1 80 51.2
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 4.8e-12 75.1 80 48.8
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 6.3e-12 74.7 80 47.5
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 6.3e-12 74.7 80 51.2
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 6.3e-12 74.7 80 51.2
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 6.3e-12 74.7 66 54.5
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 8.2e-12 74.3 80 50.0
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 8.2e-12 74.3 80 46.2
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 8.2e-12 74.3 80 48.8
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 8.2e-12 74.3 80 48.8
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 8.2e-12 74.3 80 48.8
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 8.2e-12 74.3 79 46.8
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 8.2e-12 74.3 80 46.2
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.1e-11 73.9 80 48.8
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 1.4e-11 73.6 80 47.5
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 1.4e-11 73.6 80 47.5
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 1.8e-11 73.2 76 48.7
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 2.4e-11 72.8 76 48.7
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 2.4e-11 72.8 76 48.7
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 2.4e-11 72.8 76 50.0
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 2.4e-11 72.8 80 48.8
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 2.4e-11 72.8 76 46.1
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 3.1e-11 72.4 76 48.7
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 3.1e-11 72.4 76 48.7
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 3.1e-11 72.4 76 48.7
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 3.1e-11 72.4 76 48.7
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 3.1e-11 72.4 76 48.7
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 3.1e-11 72.4 80 48.8
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 4.1e-11 72.0 80 46.2
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 4.1e-11 72.0 76 46.1
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 2.0e-10 69.7 68 52.9
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 4.5e-10 68.6 79 45.6
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 4.5e-10 68.6 73 49.3
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 1.0e-09 67.4 83 44.6
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 1.3e-09 67.0 76 44.7
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 1.3e-09 67.0 76 44.7
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 2.9e-09 65.9 71 49.3
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 3.8e-09 65.5 68 51.5
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 8.5e-09 64.3 64 51.6
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 8.5e-09 64.3 99 39.4
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 1.9e-08 63.2 68 51.5
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 7.2e-08 61.2 64 46.9
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.7e-07 59.3 52 53.8
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 8.0e-07 57.8 65 43.1
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 1.0e-06 57.4 64 46.9
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 1.4e-06 57.0 49 53.1
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 1.8e-06 56.6 66 47.0
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 2.3e-06 56.2 68 42.6
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 6.7e-06 54.7 65 41.5
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 8.8e-06 54.3 42 59.5


User provided reference genes

Program Settings