Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.5e-142 508.8 265 100.0
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 2.4e-41 173.3 242 38.0
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.7e-40 169.9 267 36.3
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.0e-39 167.9 265 36.6
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.8e-39 167.2 253 36.8
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 3.0e-39 166.4 253 36.4
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 3.0e-39 166.4 253 36.8
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 3.0e-39 166.4 253 35.6
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 3.9e-39 166.0 253 36.8
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 6.7e-39 165.2 253 36.4
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 6.7e-39 165.2 242 38.0
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.1e-38 164.5 253 35.2
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.1e-38 164.5 253 35.2
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.1e-38 164.5 253 36.0
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 1.5e-38 164.1 257 36.2
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 1.5e-38 164.1 257 36.2
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.9e-38 163.7 253 34.8
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 1.9e-38 163.7 263 37.3
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 1.9e-38 163.7 257 36.6
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 2.5e-38 163.3 253 35.2
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 2.5e-38 163.3 257 36.2
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 2.5e-38 163.3 257 35.4
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 3.3e-38 162.9 253 34.8
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.3e-38 162.9 251 35.1
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 3.3e-38 162.9 257 35.4
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 4.3e-38 162.5 253 36.0
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 4.3e-38 162.5 253 36.0
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 4.3e-38 162.5 253 35.2
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 4.3e-38 162.5 253 35.2
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 4.3e-38 162.5 257 35.4
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 4.3e-38 162.5 257 36.2
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 4.3e-38 162.5 253 35.2
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 4.3e-38 162.5 257 36.2
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 5.6e-38 162.2 253 35.6
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 5.6e-38 162.2 253 36.0
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 5.6e-38 162.2 253 35.2
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 5.6e-38 162.2 253 35.6
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 7.4e-38 161.8 253 35.6
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 7.4e-38 161.8 253 35.6
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 7.4e-38 161.8 242 36.8
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 7.4e-38 161.8 242 36.8
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 7.4e-38 161.8 242 36.8
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 7.4e-38 161.8 253 35.2
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 9.6e-38 161.4 253 35.2
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 9.6e-38 161.4 253 36.4
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.3e-37 161.0 253 36.0
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.3e-37 161.0 242 36.4
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.3e-37 161.0 253 34.8
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 1.6e-37 160.6 253 35.6
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 1.6e-37 160.6 253 35.6
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 1.6e-37 160.6 257 35.0
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.6e-37 160.6 253 36.0
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.6e-37 160.6 253 35.2
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 2.1e-37 160.2 253 36.0
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 2.1e-37 160.2 253 35.6
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 2.1e-37 160.2 253 35.2
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 2.8e-37 159.8 253 35.2
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 2.8e-37 159.8 253 35.2
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 2.8e-37 159.8 242 35.5
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 2.8e-37 159.8 253 35.6
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 2.8e-37 159.8 253 35.2
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 3.7e-37 159.5 253 34.8
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 3.7e-37 159.5 253 34.8
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 3.7e-37 159.5 253 35.2
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 3.7e-37 159.5 253 35.6
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 3.7e-37 159.5 253 34.8
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 3.7e-37 159.5 253 34.8
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 4.8e-37 159.1 253 34.8
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 4.8e-37 159.1 253 34.8
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 4.8e-37 159.1 253 34.8
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 4.8e-37 159.1 253 35.2
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 4.8e-37 159.1 253 34.8
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 4.8e-37 159.1 253 34.8
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 6.2e-37 158.7 253 35.2
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 6.2e-37 158.7 253 34.4
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 6.2e-37 158.7 254 35.4
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 6.2e-37 158.7 253 34.0
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.4e-36 157.5 253 34.4
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.4e-36 157.5 254 35.4
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 1.4e-36 157.5 253 34.4
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 1.4e-36 157.5 253 34.0
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 1.8e-36 157.1 253 34.0
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.8e-36 157.1 227 39.2
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 4.0e-36 156.0 253 34.4
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 5.3e-36 155.6 253 33.6
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 9.0e-36 154.8 221 37.1
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 9.0e-36 154.8 242 34.3
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.2e-35 154.5 237 35.4
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 1.5e-35 154.1 242 36.0
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.5e-35 154.1 242 35.1
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.4e-35 152.9 258 34.5
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 4.5e-35 152.5 218 37.6
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 5.8e-35 152.1 261 33.7
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 1.3e-34 151.0 248 36.7
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 1.7e-34 150.6 241 34.9
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 8.4e-34 148.3 253 34.8
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 3.2e-33 146.4 277 32.1
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 5.5e-33 145.6 221 34.8
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 9.3e-33 144.8 273 31.9
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.8e-31 140.6 205 40.0
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.8e-31 140.6 205 39.0
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.1e-30 137.9 253 32.4
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 3.3e-30 136.3 214 36.0
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 5.7e-30 135.6 250 33.6
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 7.4e-30 135.2 300 30.3
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 7.4e-30 135.2 207 37.2
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 1.1e-28 131.3 239 33.1
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 1.2e-27 127.9 190 37.9
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 5.8e-27 125.6 258 31.8
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 2.9e-26 123.2 197 36.0
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.9e-25 120.6 198 37.9
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 5.5e-25 119.0 283 29.3
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 7.1e-25 118.6 158 42.4
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 6.1e-24 115.5 256 31.6
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 3.1e-20 103.2 253 27.7
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 4.1e-20 102.8 189 31.7
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 5.3e-20 102.4 169 35.5
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 7.7e-19 98.6 169 33.7
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 5.7e-14 82.4 200 26.5
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 9.7e-14 81.6 98 37.8
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 2.8e-13 80.1 110 38.2
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 2.8e-13 80.1 98 38.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.3e-10 71.2 92 44.6
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 3.8e-10 69.7 83 39.8
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 1.4e-09 67.8 98 34.7
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.4e-09 67.8 118 33.1
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 2.5e-09 67.0 100 39.0
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 9.4e-09 65.1 93 32.3


User provided reference genes

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