Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026557 Carpinus fangiana HOM05D003318 ORTHO05D125285 2.6e-228 795.0 408 100.0
Psat0ss3962g0480 Pisum sativum HOM05D003318 ORTHO05D004544 3.0e-38 163.7 301 37.2
QL11p012704 Quercus lobata HOM05D003318 ORTHO05D004544 3.9e-38 163.3 320 35.6
Rhsim08G0174000 Rhododendron simsii HOM05D003318 ORTHO05D004544 5.1e-38 162.9 296 38.9
Manes.06G106300 Manihot esculenta HOM05D003318 ORTHO05D004544 8.7e-38 162.2 296 38.9
MELO3C002275.2 Cucumis melo HOM05D003318 ORTHO05D004544 1.1e-37 161.8 322 35.7
Potri.012G082700 Populus trichocarpa HOM05D003318 ORTHO05D004544 1.1e-37 161.8 297 38.0
Sed0012780 Sechium edule HOM05D003318 ORTHO05D004544 1.1e-37 161.8 321 36.1
CiPaw.12G028100 Carya illinoinensis HOM05D003318 ORTHO05D004544 1.5e-37 161.4 295 39.0
ClCG01G013250 Citrullus lanatus HOM05D003318 ORTHO05D004544 1.5e-37 161.4 321 35.2
Sabra12G0059400 Salix brachista HOM05D003318 ORTHO05D004544 1.5e-37 161.4 297 37.4
Actinidia33079 Actinidia chinensis HOM05D003318 ORTHO05D004544 1.9e-37 161.0 320 35.6
Lj1g0000906 Lotus japonicus HOM05D003318 ORTHO05D004544 1.9e-37 161.0 297 38.4
RcHm_v2.0_Chr7g0193331 Rosa chinensis HOM05D003318 ORTHO05D004544 1.9e-37 161.0 295 38.0
CsaV3_1G008610 Cucumis sativus L. HOM05D003318 ORTHO05D004544 2.5e-37 160.6 322 35.7
CSS0041520 Camellia sinensis var. sinensis HOM05D003318 ORTHO05D004544 3.3e-37 160.2 297 37.0
Sopen06g027840 Solanum pennellii HOM05D003318 ORTHO05D004544 3.3e-37 160.2 301 37.2
Haze_07523 Corylus avellana HOM05D003318 ORTHO05D004544 4.3e-37 159.8 320 37.2
QL08p043380 Quercus lobata HOM05D003318 ORTHO05D004544 5.6e-37 159.5 402 33.1
Dinv38569 Davidia involucrata HOM05D003318 ORTHO05D004544 7.3e-37 159.1 297 37.0
Lj5A126T76 Lonicera japonica HOM05D003318 ORTHO05D004544 7.3e-37 159.1 297 37.4
vmacro19403 Vaccinium macrocarpon HOM05D003318 ORTHO05D004544 7.3e-37 159.1 320 35.6
Cc04_g12170 Coffea canephora HOM05D003318 ORTHO05D004544 9.6e-37 158.7 296 37.5
Sabra15G0103300 Salix brachista HOM05D003318 ORTHO05D004544 9.6e-37 158.7 297 37.7
Haze_26927 Corylus avellana HOM05D003318 ORTHO05D004544 1.3e-36 158.3 354 33.9
Lsat_1_v5_gn_1_28341 Lactuca sativa HOM05D003318 ORTHO05D004544 1.6e-36 157.9 295 39.0
Nitab4.5_0000003g0690 Nicotiana tabacum HOM05D003318 ORTHO05D004544 1.6e-36 157.9 303 36.3
Oeu016410.1 Olea europaea HOM05D003318 ORTHO05D004544 1.6e-36 157.9 312 36.9
PGSC0003DMG400031392 Solanum tuberosum HOM05D003318 ORTHO05D004544 1.6e-36 157.9 297 37.4
Cfa019154 Carpinus fangiana HOM05D003318 ORTHO05D004544 2.1e-36 157.5 296 38.5
TAR622G0444 Trochodendron aralioides HOM05D003318 ORTHO05D004544 2.1e-36 157.5 297 37.7
Dinv20635 Davidia involucrata HOM05D003318 ORTHO05D004544 2.8e-36 157.1 296 37.2
ECA247G3283 Erigeron canadensis HOM05D003318 ORTHO05D004544 2.8e-36 157.1 299 37.8
Gohir.D12G275900 Gossypium hirsutum HOM05D003318 ORTHO05D004544 2.8e-36 157.1 297 37.7
MSTRG.23140 Avicennia marina HOM05D003318 ORTHO05D004544 3.6e-36 156.8 297 36.4
TAR629G1623 Trochodendron aralioides HOM05D003318 ORTHO05D004544 3.6e-36 156.8 297 38.4
Gorai.008G296400 Gossypium raimondii HOM05D003318 ORTHO05D004544 4.8e-36 156.4 297 37.7
HanXRQChr09g0251391 Helianthus annuus HOM05D003318 ORTHO05D004544 4.8e-36 156.4 299 38.1
Lsat_1_v5_gn_4_183240 Lactuca sativa HOM05D003318 ORTHO05D004544 4.8e-36 156.4 251 39.8
Prupe.5G171400 Prunus persica HOM05D003318 ORTHO05D004544 4.8e-36 156.4 295 38.3
Solyc06g071550.3 Solanum lycopersicum HOM05D003318 ORTHO05D004544 4.8e-36 156.4 301 36.5
PGSC0003DMG402027084 Solanum tuberosum HOM05D003318 ORTHO05D004544 4.8e-36 156.4 301 36.5
HPP92_007429 Vanilla planifolia HOM05D003318 ORTHO05D004544 4.8e-36 156.4 297 36.4
MD06G1172000 Malus domestica HOM05D003318 ORTHO05D004544 6.2e-36 156.0 295 38.0
CiPaw.11G024300 Carya illinoinensis HOM05D003318 ORTHO05D004544 1.1e-35 155.2 296 37.2
Eucgr.B00293 Eucalyptus grandis HOM05D003318 ORTHO05D004544 1.1e-35 155.2 297 38.4
Phvul.009G177200 Phaseolus vulgaris HOM05D003318 ORTHO05D004544 1.1e-35 155.2 296 36.5
Sed0002340 Sechium edule HOM05D003318 ORTHO05D004544 1.1e-35 155.2 321 35.5
Sc04g0001710 Simmondsia chinensis HOM05D003318 ORTHO05D004544 1.1e-35 155.2 297 38.0
Sopen12g014750 Solanum pennellii HOM05D003318 ORTHO05D004544 1.4e-35 154.8 297 37.0
Dinv33471 Davidia involucrata HOM05D003318 ORTHO05D004544 1.8e-35 154.5 297 36.0
Migut.H00094 Erythranthe guttata HOM05D003318 ORTHO05D004544 1.8e-35 154.5 297 37.7
Thecc.03G014800 Theobroma cacao HOM05D003318 ORTHO05D004544 1.8e-35 154.5 297 36.7
GSVIVG01007720001 Vitis vinifera HOM05D003318 ORTHO05D004544 1.8e-35 154.5 296 38.2
arahy.Tifrunner.gnm1.ann1.XU68ZZ Arachis hypogaea HOM05D003318 ORTHO05D004544 2.4e-35 154.1 382 33.0
CDE06G1481 Ceratophyllum demersum HOM05D003318 ORTHO05D004544 2.4e-35 154.1 295 37.3
Hma1.2p1_0993F.1_g245293 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 2.4e-35 154.1 297 36.4
Hma1.2p1_0999F.1_g246340 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 2.4e-35 154.1 297 36.4
SHI00282 Sapria himalayana HOM05D003318 ORTHO05D004544 2.4e-35 154.1 398 33.4
TAR374G0007 Trochodendron aralioides HOM05D003318 ORTHO05D004544 2.4e-35 154.1 295 37.6
Nitab4.5_0001659g0170 Nicotiana tabacum HOM05D003318 ORTHO05D004544 3.1e-35 153.7 301 37.2
VMungo1309G2893 Vigna mungo HOM05D003318 ORTHO05D004544 3.1e-35 153.7 416 29.1
GSVIVG01032439001 Vitis vinifera HOM05D003318 ORTHO05D004544 3.1e-35 153.7 297 36.0
CANSAT80G1582 Cannabis sativa HOM05D003318 ORTHO05D004544 4.0e-35 153.3 297 37.0
RcHm_v2.0_Chr6g0263071 Rosa chinensis HOM05D003318 ORTHO05D004544 4.0e-35 153.3 287 38.0
arahy.Tifrunner.gnm1.ann1.GNW9LV Arachis hypogaea HOM05D003318 ORTHO05D004544 5.3e-35 152.9 380 32.6
Cc07_g01950 Coffea canephora HOM05D003318 ORTHO05D004544 5.3e-35 152.9 346 37.0
Migut.O00115 Erythranthe guttata HOM05D003318 ORTHO05D004544 5.3e-35 152.9 297 36.0
Glyma.04G184900 Glycine max HOM05D003318 ORTHO05D004544 5.3e-35 152.9 297 37.0
SGA_v2.0_scaffold481G52331 Striga asiatica HOM05D003318 ORTHO05D004544 5.3e-35 152.9 300 38.3
Peaxi162Scf00689g00118 Petunia axillaris HOM05D003318 ORTHO05D004544 6.9e-35 152.5 301 36.5
Solyc12g035190.2 Solanum lycopersicum HOM05D003318 ORTHO05D004544 6.9e-35 152.5 297 36.7
Nn4g22710 Nelumbo nucifera HOM05D003318 ORTHO05D004544 9.0e-35 152.1 324 34.9
PSO478G3254 Papaver somniferum HOM05D003318 ORTHO05D004544 9.0e-35 152.1 300 36.7
SalBow5G2274 Salvia bowleyana HOM05D003318 ORTHO05D004544 9.0e-35 152.1 297 36.0
ECA232G1375 Erigeron canadensis HOM05D003318 ORTHO05D004544 1.2e-34 151.8 268 39.2
MD14G1177900 Malus domestica HOM05D003318 ORTHO05D004544 1.2e-34 151.8 394 33.2
Nitab4.5_0006198g0010 Nicotiana tabacum HOM05D003318 ORTHO05D004544 1.2e-34 151.8 312 35.6
Atru.chr9.2499 Acer truncatum HOM05D003318 ORTHO05D004544 1.5e-34 151.4 300 37.3
Ah.02g110590 Amaranthus hybridus HOM05D003318 ORTHO05D004544 1.5e-34 151.4 299 35.5
Hma1.2p1_2568F.1_g324540 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 1.5e-34 151.4 319 35.4
Aqoxy3G01070 Aquilegia oxysepala HOM05D003318 ORTHO05D004544 2.0e-34 151.0 297 36.4
CAN.G1166.8 Capsicum annuum HOM05D003318 ORTHO05D004544 2.0e-34 151.0 301 37.5
CARHR195080 Cardamine hirsuta HOM05D003318 ORTHO05D004544 2.0e-34 151.0 295 37.3
Dinv35091 Davidia involucrata HOM05D003318 ORTHO05D004544 2.0e-34 151.0 297 36.0
Lalb_Chr08g0236611 Lupinus albus HOM05D003318 ORTHO05D004544 2.0e-34 151.0 409 32.3
Oeu023437.2 Olea europaea HOM05D003318 ORTHO05D004544 2.0e-34 151.0 295 35.9
FAN04G1614 Fragaria x ananassa HOM05D003318 ORTHO05D004544 2.6e-34 150.6 287 38.3
MBI16_g39220_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D004544 2.6e-34 150.6 295 36.6
PGR083G1815 Punica granatum HOM05D003318 ORTHO05D004544 2.6e-34 150.6 295 36.3
PSO017G3133 Papaver somniferum HOM05D003318 ORTHO05D004544 4.5e-34 149.8 300 36.3
MSTRG.11467 Avicennia marina HOM05D003318 ORTHO05D004544 5.8e-34 149.4 297 35.4
CAN.G2085.3 Capsicum annuum HOM05D003318 ORTHO05D004544 5.8e-34 149.4 301 35.5
Ca_16165_v3 Cicer arietinum L. HOM05D003318 ORTHO05D004544 5.8e-34 149.4 295 38.0
FvH4_5g05490 Fragaria vesca HOM05D003318 ORTHO05D004544 5.8e-34 149.4 287 38.0
FAN18G0002 Fragaria x ananassa HOM05D003318 ORTHO05D004544 5.8e-34 149.4 287 38.0
Gohir.A12G275200 Gossypium hirsutum HOM05D003318 ORTHO05D004544 5.8e-34 149.4 297 37.0
HanXRQChr09g0254931 Helianthus annuus HOM05D003318 ORTHO05D004544 5.8e-34 149.4 241 40.2
vmacro05848 Vaccinium macrocarpon HOM05D003318 ORTHO05D004544 5.8e-34 149.4 297 36.4
AT5G17990 Arabidopsis thaliana HOM05D003318 ORTHO05D004544 7.6e-34 149.1 266 39.8
MSTRG.24028 Avicennia marina HOM05D003318 ORTHO05D004544 7.6e-34 149.1 297 37.0
Nn3g16817 Nelumbo nucifera HOM05D003318 ORTHO05D004544 7.6e-34 149.1 300 36.7
Peaxi162Scf00700g00534 Petunia axillaris HOM05D003318 ORTHO05D004544 7.6e-34 149.1 297 37.0
Actinidia36099 Actinidia chinensis HOM05D003318 ORTHO05D004544 9.9e-34 148.7 287 37.6
THA.LOC104820782 Tarenaya hassleriana HOM05D003318 ORTHO05D004544 9.9e-34 148.7 297 36.7
BcaB08g36721 Brassica carinata HOM05D003318 ORTHO05D004544 1.3e-33 148.3 287 37.3
A10p21530 Brassica napus HOM05D003318 ORTHO05D004544 2.9e-33 147.1 287 37.6
Lj7A595G62 Lonicera japonica HOM05D003318 ORTHO05D004544 2.9e-33 147.1 339 32.2
Medtr3g077590 Medicago truncatula HOM05D003318 ORTHO05D004544 2.9e-33 147.1 297 36.4
AL6G29090 Arabidopsis lyrata HOM05D003318 ORTHO05D004544 3.8e-33 146.7 295 36.6
BcaC04g18737 Brassica carinata HOM05D003318 ORTHO05D004544 3.8e-33 146.7 287 37.6
C09p59000 Brassica napus HOM05D003318 ORTHO05D004544 3.8e-33 146.7 287 37.6
BolC9t58746H Brassica oleracea HOM05D003318 ORTHO05D004544 3.8e-33 146.7 287 37.6
BraA10t44214Z Brassica rapa HOM05D003318 ORTHO05D004544 3.8e-33 146.7 287 37.3
Ciclev10020016m.g Citrus clementina HOM05D003318 ORTHO05D004544 3.8e-33 146.7 298 35.9
DCAR_016479 Daucus carota HOM05D003318 ORTHO05D004544 3.8e-33 146.7 287 38.3
DCAR_021707 Daucus carota HOM05D003318 ORTHO05D004544 3.8e-33 146.7 300 34.7
Thhalv10013530m.g Eutrema salsugineum HOM05D003318 ORTHO05D004544 3.8e-33 146.7 264 38.6
Aa31LG11G11520 Aethionema arabicum HOM05D003318 ORTHO05D004544 8.4e-33 145.6 283 37.5
Aa31LG5G14350 Aethionema arabicum HOM05D003318 ORTHO05D004544 1.1e-32 145.2 240 39.6
FAN18G0175 Fragaria x ananassa HOM05D003318 ORTHO05D004544 1.1e-32 145.2 287 37.3
Carub.0006s1618 Capsella rubella HOM05D003318 ORTHO05D004544 1.4e-32 144.8 295 36.3
SGA_v2.0_scaffold116G32230 Striga asiatica HOM05D003318 ORTHO05D004544 1.4e-32 144.8 310 33.5
Hund02756 Selenicereus undatus HOM05D003318 ORTHO05D004544 1.9e-32 144.4 297 34.7
TWI14G1066 Tripterygium wilfordii HOM05D003318 ORTHO05D004544 1.9e-32 144.4 296 36.8
Sp6g26300 Schrenkiella parvula HOM05D003318 ORTHO05D004544 2.4e-32 144.1 268 38.1
SMO353G0193 Selaginella moellendorffii HOM05D003318 ORTHO05D004544 3.2e-32 143.7 362 32.6
BcaB05g23318 Brassica carinata HOM05D003318 ORTHO05D004544 5.4e-32 142.9 288 37.5
COL.COLO4_30076 Corchorus olitorius HOM05D003318 ORTHO05D004544 5.4e-32 142.9 218 41.3
C02p09560 Brassica napus HOM05D003318 ORTHO05D004544 7.1e-32 142.5 264 38.3
A02p04620 Brassica napus HOM05D003318 ORTHO05D004544 9.3e-32 142.1 264 38.3
BraA02t05423Z Brassica rapa HOM05D003318 ORTHO05D004544 9.3e-32 142.1 264 38.3
MBI10_g27994_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D004544 1.2e-31 141.7 308 35.4
BcaC03g13562 Brassica carinata HOM05D003318 ORTHO05D004544 2.1e-31 141.0 264 37.9
BolC2t06863H Brassica oleracea HOM05D003318 ORTHO05D004544 2.1e-31 141.0 264 37.9
Mapoly0027s0124 Marchantia polymorpha HOM05D003318 ORTHO05D004544 2.7e-31 140.6 359 35.1
unitig_61.g26476 Utricularia gibba HOM05D003318 ORTHO05D004544 2.7e-31 140.6 297 35.0
Pp3c17_16690 Physcomitrium patens HOM05D003318 ORTHO05D004544 3.5e-31 140.2 335 33.4
AUR62030944 Chenopodium quinoa HOM05D003318 ORTHO05D004544 7.9e-31 139.0 287 34.5
ATR1091G089 Amborella trichopoda HOM05D003318 ORTHO05D004544 1.0e-30 138.7 310 35.5
AUR62008192 Chenopodium quinoa HOM05D003318 ORTHO05D004544 1.3e-30 138.3 287 34.5
SalBow1G7854 Salvia bowleyana HOM05D003318 ORTHO05D004544 2.3e-30 137.5 303 34.0
Zm00001eb403640 Zea mays HOM05D003318 ORTHO05D004544 5.6e-29 132.9 318 34.0
PRCOL_00005811 Prasinoderma coloniale HOM05D003318 ORTHO05D004544 1.3e-28 131.7 336 30.4
Os03g0126000 Oryza sativa ssp. japonica HOM05D003318 ORTHO05D004544 3.7e-28 130.2 264 36.4
Rhsim10G0019100 Rhododendron simsii HOM05D003318 ORTHO05D004544 8.1e-28 129.0 251 35.9
Aqoxy1G03320 Aquilegia oxysepala HOM05D003318 ORTHO05D004544 5.8e-26 122.9 296 32.1
Nitab4.5_0002643g0020 Nicotiana tabacum HOM05D003318 ORTHO05D004544 1.1e-24 118.6 299 33.8
RcHm_v2.0_Chr6g0263081 Rosa chinensis HOM05D003318 ORTHO05D004544 2.5e-24 117.5 162 45.1
Cre10.g429150 Chlamydomonas reinhardtii HOM05D003318 ORTHO05D004544 4.2e-24 116.7 218 35.8
AagrBONN_evm.TU.Sc2ySwM_362.2078 Anthoceros agrestis HOM05D003318 ORTHO05D004544 5.5e-24 116.3 320 29.4
EL10Ac5g10728 Beta vulgaris HOM05D003318 ORTHO05D004544 9.3e-24 115.5 295 32.2
SGA_v2.0_scaffold90G27893 Striga asiatica HOM05D003318 ORTHO05D004544 9.3e-24 115.5 316 31.3
RcHm_v2.0_Chr6g0263061 Rosa chinensis HOM05D003318 ORTHO05D004544 6.0e-23 112.8 163 44.8
FAN02G4038 Fragaria x ananassa HOM05D003318 ORTHO05D004544 7.9e-23 112.5 202 36.1
Aqoxy248s001 Aquilegia oxysepala HOM05D003318 ORTHO05D004544 3.0e-22 110.5 163 42.9
Nitab4.5_0002306g0030 Nicotiana tabacum HOM05D003318 ORTHO05D004544 4.3e-21 106.7 295 31.2
MCO09G499 Micromonas commoda HOM05D003318 ORTHO05D004544 1.3e-20 105.1 224 32.1
Duzib205G1868 Durio zibethinus HOM05D003318 ORTHO05D004544 8.2e-20 102.4 149 43.0
Cpa.g.sc928.1 Carica papaya HOM05D003318 ORTHO05D004544 1.5e-18 98.2 131 44.3
SEGI_31346 Sequoiadendron giganteum HOM05D003318 ORTHO05D004544 1.3e-17 95.1 131 42.0
TPR.G25990 Trifolium pratense HOM05D003318 ORTHO05D004544 3.8e-17 93.6 207 33.3
MBI10_g40111_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D004544 1.6e-12 78.2 264 31.8
Hma1.2p1_0592F.1_g185485 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 2.6e-10 70.9 268 31.3
PGSC0003DMG400018097 Solanum tuberosum HOM05D003318 ORTHO05D009063 2.9e-09 67.4 133 33.8
Ah.11g051490 Amaranthus hybridus HOM05D003318 ORTHO05D004544 1.1e-08 65.5 144 36.1
FAN14G3301 Fragaria x ananassa HOM05D003318 ORTHO05D004544 1.6e-07 61.6 164 29.9
Manes.14G064001 Manihot esculenta HOM05D003318 ORTHO05D004544 1.4e-06 58.5 204 29.9


User provided reference genes

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