Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 7.2e-217 756.9 369 100.0
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 2.5e-84 316.6 358 47.8
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 2.0e-57 227.3 284 41.9
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 4.4e-57 226.1 284 40.8
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 4.4e-57 226.1 312 40.4
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 5.8e-57 225.7 288 42.4
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 7.6e-57 225.3 284 41.5
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 9.9e-57 224.9 314 42.4
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.7e-56 224.2 288 41.3
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 2.4e-55 220.3 284 41.2
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 4.1e-55 219.5 297 40.4
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 5.4e-55 219.2 284 41.9
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 5.4e-55 219.2 284 40.1
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.5e-54 216.5 284 39.8
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 3.5e-54 216.5 294 40.8
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 3.5e-54 216.5 284 41.5
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 3.5e-54 216.5 284 39.4
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.6e-54 216.1 284 39.8
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 4.6e-54 216.1 284 39.4
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 4.6e-54 216.1 347 36.9
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 6.0e-54 215.7 300 39.3
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 6.0e-54 215.7 284 39.4
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 6.0e-54 215.7 342 37.7
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 7.8e-54 215.3 284 40.1
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 7.8e-54 215.3 326 38.0
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.0e-53 214.9 284 40.1
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.0e-53 214.9 284 40.1
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 1.0e-53 214.9 284 40.8
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.0e-53 214.9 284 40.5
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.3e-53 214.5 284 39.4
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.3e-53 214.5 284 40.1
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 1.3e-53 214.5 295 39.7
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 1.3e-53 214.5 284 40.1
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.7e-53 214.2 288 40.3
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.7e-53 214.2 340 36.8
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.3e-53 213.8 298 39.9
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 2.3e-53 213.8 293 39.2
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 2.3e-53 213.8 292 40.4
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 3.0e-53 213.4 297 40.4
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 3.0e-53 213.4 284 40.8
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 3.0e-53 213.4 288 41.0
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 5.1e-53 212.6 299 39.1
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 5.1e-53 212.6 305 38.7
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 5.1e-53 212.6 286 40.6
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 5.1e-53 212.6 300 39.3
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 6.6e-53 212.2 300 39.0
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 1.5e-52 211.1 302 38.4
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.9e-52 210.7 290 39.0
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.9e-52 210.7 284 40.1
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.9e-52 210.7 284 40.1
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 1.9e-52 210.7 296 40.2
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 2.5e-52 210.3 284 39.8
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 4.3e-52 209.5 297 39.7
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 5.6e-52 209.1 284 39.4
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 5.6e-52 209.1 284 40.5
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 7.3e-52 208.8 290 39.7
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 7.3e-52 208.8 290 39.7
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 7.3e-52 208.8 284 40.1
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 7.3e-52 208.8 288 40.6
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 9.6e-52 208.4 293 38.9
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 1.2e-51 208.0 284 39.1
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 1.2e-51 208.0 284 40.1
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.1e-51 207.2 284 39.1
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 2.1e-51 207.2 325 38.2
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 2.1e-51 207.2 310 37.4
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 2.8e-51 206.8 342 34.8
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 3.6e-51 206.5 284 39.1
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 8.1e-51 205.3 288 39.6
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.1e-50 204.9 284 38.4
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 1.1e-50 204.9 315 37.5
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.1e-50 204.9 291 39.5
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.1e-50 204.9 293 38.6
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 1.4e-50 204.5 310 37.7
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.8e-50 204.1 284 39.4
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 4.0e-50 203.0 289 38.8
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 4.0e-50 203.0 215 44.2
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 5.2e-50 202.6 285 38.2
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 5.2e-50 202.6 284 38.4
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 1.2e-49 201.4 292 38.7
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 1.2e-49 201.4 268 40.7
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.5e-49 201.1 299 37.5
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 2.0e-49 200.7 331 36.6
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 2.0e-49 200.7 298 38.3
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 3.4e-49 199.9 298 38.3
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 7.6e-49 198.7 293 38.9
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 9.9e-49 198.4 203 47.3
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 1.3e-48 198.0 213 45.5
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 1.7e-48 197.6 213 45.5
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.7e-48 197.6 213 45.5
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 4.9e-48 196.1 272 37.9
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 1.1e-47 194.9 213 44.6
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 1.4e-47 194.5 247 42.1
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.4e-47 194.5 223 43.5
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.9e-47 194.1 208 44.7
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 2.4e-47 193.7 285 39.3
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 2.4e-47 193.7 243 43.6
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 5.4e-47 192.6 201 45.8
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 7.1e-47 192.2 311 37.0
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 6.0e-46 189.1 272 39.3
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 1.0e-45 188.3 215 42.3
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 1.7e-45 187.6 265 39.6
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 2.5e-44 183.7 339 33.6
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 4.4e-41 172.9 228 40.4
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 2.2e-40 170.6 266 36.5
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 8.4e-40 168.7 188 44.1
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 1.9e-39 167.5 300 33.0
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 7.1e-39 165.6 188 43.1
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.9e-36 157.5 279 35.5
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 7.6e-33 145.6 294 32.3
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 9.9e-33 145.2 284 34.2
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 4.2e-31 139.8 164 40.9
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 9.3e-31 138.7 150 44.0
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 1.2e-30 138.3 260 31.2
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.6e-30 137.9 214 36.9
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 7.9e-30 135.6 305 31.8
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.5e-28 130.6 291 33.7
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 8.1e-27 125.6 128 44.5
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 3.1e-26 123.6 137 42.3
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 1.5e-25 121.3 128 44.5
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 2.5e-23 114.0 187 37.4
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.5e-20 104.8 116 43.1
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.7e-16 91.3 149 38.3
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.9e-16 90.5 97 42.3
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 4.2e-15 86.7 87 44.8
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 1.5e-12 78.2 75 52.0
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 6.3e-11 72.8 119 37.8
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 5.3e-10 69.7 218 29.4
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 1.3e-08 65.1 76 42.1


User provided reference genes

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