Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 3.7e-108 394.8 191 100.0
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 8.0e-10 68.2 136 34.6
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 8.8e-09 64.7 92 35.9
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.2e-08 64.3 101 35.6
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 1.2e-08 64.3 109 35.8
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 1.5e-08 63.9 97 36.1
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 2.6e-08 63.2 97 39.2
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 9.8e-08 61.2 46 56.5
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 9.8e-08 61.2 46 56.5
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.3e-07 60.8 44 59.1
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 1.7e-07 60.5 96 34.4
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.7e-07 60.5 46 56.5
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 1.7e-07 60.5 46 56.5
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.7e-07 60.5 79 39.2
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.7e-07 60.5 46 56.5
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.2e-07 60.1 101 34.7
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 2.2e-07 60.1 44 59.1
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 2.8e-07 59.7 44 56.8
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.8e-07 59.7 46 54.3
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.8e-07 59.7 46 54.3
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.8e-07 59.7 101 34.7
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 2.8e-07 59.7 101 34.7
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 3.7e-07 59.3 93 35.5
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 4.8e-07 58.9 44 56.8
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 6.3e-07 58.5 44 54.5
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 6.3e-07 58.5 44 54.5
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 6.3e-07 58.5 44 54.5
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 6.3e-07 58.5 44 54.5
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 6.3e-07 58.5 44 54.5
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 6.3e-07 58.5 104 33.7
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 6.3e-07 58.5 44 54.5
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 6.3e-07 58.5 103 33.0
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 8.3e-07 58.2 43 58.1
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 8.3e-07 58.2 46 52.2
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 8.3e-07 58.2 74 40.5
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 8.3e-07 58.2 52 46.2
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 1.4e-06 57.4 44 54.5
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 1.4e-06 57.4 44 54.5
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.4e-06 57.4 93 34.4
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.8e-06 57.0 93 34.4
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.8e-06 57.0 58 46.6
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-06 57.0 58 46.6
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-06 57.0 58 46.6
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-06 57.0 58 46.6
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-06 57.0 58 46.6
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 2.4e-06 56.6 43 55.8
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 3.1e-06 56.2 97 33.0
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 3.1e-06 56.2 97 33.0
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 3.1e-06 56.2 46 56.5
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 3.1e-06 56.2 44 52.3
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 3.1e-06 56.2 44 52.3
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 3.1e-06 56.2 111 32.4
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 3.1e-06 56.2 46 52.2
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 4.1e-06 55.8 101 31.7
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 4.1e-06 55.8 111 33.3
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 4.1e-06 55.8 48 47.9
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 5.4e-06 55.5 49 46.9
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 5.4e-06 55.5 44 54.5
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 5.4e-06 55.5 49 44.9
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 9.1e-06 54.7 92 33.7
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 9.1e-06 54.7 39 56.4
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 9.1e-06 54.7 39 56.4
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 9.1e-06 54.7 44 50.0
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 9.1e-06 54.7 46 54.3
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 9.1e-06 54.7 46 50.0


User provided reference genes

Program Settings