Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026320 Carpinus fangiana HOM05D003636 ORTHO05D005160 0.0e+00 1243.8 700 100.0
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 5.7e-37 160.2 283 37.1
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 6.3e-36 156.8 354 31.1
unitig_736.g22446 Utricularia gibba HOM05D003636 ORTHO05D005160 4.2e-32 144.1 298 33.6
SEGI_36314 Sequoiadendron giganteum HOM05D003636 ORTHO05D005160 1.6e-31 142.1 287 32.8
ATR0665G579 Amborella trichopoda HOM05D003636 ORTHO05D005160 4.6e-31 140.6 299 33.1
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 6.1e-31 140.2 302 32.5
SGA_v2.0_scaffold101G29798 Striga asiatica HOM05D003636 ORTHO05D005160 1.0e-30 139.4 282 34.4
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 1.8e-30 138.7 563 26.3
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 2.3e-30 138.3 302 31.5
HanXRQChr06g0181471 Helianthus annuus HOM05D003636 ORTHO05D005160 3.9e-30 137.5 298 32.6
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 3.9e-30 137.5 284 32.4
CAN.G1007.10 Capsicum annuum HOM05D003636 ORTHO05D005160 5.1e-30 137.1 298 32.2
ECA233G4087 Erigeron canadensis HOM05D003636 ORTHO05D005160 5.1e-30 137.1 327 31.5
QL02p053474 Quercus lobata HOM05D003636 ORTHO05D005160 6.7e-30 136.7 347 30.5
SalBow2G0018 Salvia bowleyana HOM05D003636 ORTHO05D005160 8.8e-30 136.3 316 31.6
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 1.1e-29 136.0 601 25.6
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 1.5e-29 135.6 557 24.1
CDE06G0563 Ceratophyllum demersum HOM05D003636 ORTHO05D005160 1.5e-29 135.6 567 27.0
Nitab4.5_0000026g0370 Nicotiana tabacum HOM05D003636 ORTHO05D005160 2.5e-29 134.8 299 32.8
Aqoxy2G03579 Aquilegia oxysepala HOM05D003636 ORTHO05D005160 3.3e-29 134.4 285 34.7
HanXRQChr09g0258341 Helianthus annuus HOM05D003636 ORTHO05D005160 4.3e-29 134.0 352 30.4
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 4.3e-29 134.0 425 29.9
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 4.3e-29 134.0 294 31.0
MSTRG.4105 Avicennia marina HOM05D003636 ORTHO05D005160 5.7e-29 133.7 298 31.2
Cpa.g.sc58.55 Carica papaya HOM05D003636 ORTHO05D005160 5.7e-29 133.7 305 30.8
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 5.7e-29 133.7 349 29.5
Mapoly0080s0020 Marchantia polymorpha HOM05D003636 ORTHO05D005160 7.4e-29 133.3 287 31.0
Sc13g0005100 Simmondsia chinensis HOM05D003636 ORTHO05D005160 7.4e-29 133.3 565 25.1
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 7.4e-29 133.3 345 30.4
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 9.7e-29 132.9 644 25.2
Ca_11092_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 1.3e-28 132.5 382 27.7
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 1.3e-28 132.5 345 30.4
Cc03_g04930 Coffea canephora HOM05D003636 ORTHO05D005160 1.7e-28 132.1 350 31.1
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 1.7e-28 132.1 345 30.4
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 2.2e-28 131.7 595 24.7
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 2.2e-28 131.7 284 32.4
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 2.8e-28 131.3 345 29.3
Nitab4.5_0001418g0070 Nicotiana tabacum HOM05D003636 ORTHO05D005160 2.8e-28 131.3 298 30.9
Hund02552 Selenicereus undatus HOM05D003636 ORTHO05D005160 3.7e-28 131.0 404 29.2
Atru.chr4.2209 Acer truncatum HOM05D003636 ORTHO05D005160 4.8e-28 130.6 342 29.5
EL10Ac2g03737 Beta vulgaris HOM05D003636 ORTHO05D005160 6.3e-28 130.2 242 35.1
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 6.3e-28 130.2 581 23.6
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 6.3e-28 130.2 300 32.0
Nitab4.5_0000525g0280 Nicotiana tabacum HOM05D003636 ORTHO05D005160 6.3e-28 130.2 282 31.9
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 6.3e-28 130.2 395 28.6
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 8.2e-28 129.8 565 24.8
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 8.2e-28 129.8 281 31.0
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 8.2e-28 129.8 410 28.5
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 1.4e-27 129.0 559 25.8
FvH4_4g02820 Fragaria vesca HOM05D003636 ORTHO05D005160 1.4e-27 129.0 300 31.0
MBI11_g20311_MAGBIO Magnolia biondii HOM05D003636 ORTHO05D005160 1.4e-27 129.0 278 32.0
Cc01_g03130 Coffea canephora HOM05D003636 ORTHO05D005160 1.8e-27 128.6 287 32.4
PGR142G0130 Punica granatum HOM05D003636 ORTHO05D005160 1.8e-27 128.6 242 35.1
CSS0043760 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 2.4e-27 128.3 549 25.7
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 2.4e-27 128.3 283 31.8
Migut.G00443 Erythranthe guttata HOM05D003636 ORTHO05D005160 2.4e-27 128.3 568 24.5
BcaC04g22040 Brassica carinata HOM05D003636 ORTHO05D005160 3.1e-27 127.9 567 24.9
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 3.1e-27 127.9 282 31.2
Haze_11308 Corylus avellana HOM05D003636 ORTHO05D005160 3.1e-27 127.9 350 29.1
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 3.1e-27 127.9 285 32.3
Hund05016 Selenicereus undatus HOM05D003636 ORTHO05D005160 3.1e-27 127.9 344 29.7
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 4.1e-27 127.5 281 32.0
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 4.1e-27 127.5 544 23.9
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 4.1e-27 127.5 586 25.1
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 5.3e-27 127.1 281 32.0
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 5.3e-27 127.1 346 28.6
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 6.9e-27 126.7 559 25.8
Peaxi162Scf00813g00221 Petunia axillaris HOM05D003636 ORTHO05D005160 6.9e-27 126.7 329 30.4
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 9.1e-27 126.3 562 24.7
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 9.1e-27 126.3 456 27.6
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 9.1e-27 126.3 455 27.7
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 1.2e-26 125.9 345 28.7
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 1.5e-26 125.6 656 25.0
Haze_11311 Corylus avellana HOM05D003636 ORTHO05D005160 1.5e-26 125.6 570 26.1
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 2.6e-26 124.8 578 25.4
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 3.4e-26 124.4 425 26.4
FAN17G1850 Fragaria x ananassa HOM05D003636 ORTHO05D005160 3.4e-26 124.4 560 25.2
MD16G1209600 Malus domestica HOM05D003636 ORTHO05D005160 3.4e-26 124.4 348 28.4
PSO017G1763 Papaver somniferum HOM05D003636 ORTHO05D005160 3.4e-26 124.4 292 30.1
Dinv44638 Davidia involucrata HOM05D003636 ORTHO05D005160 4.5e-26 124.0 334 29.6
Eucgr.G02714 Eucalyptus grandis HOM05D003636 ORTHO05D005160 4.5e-26 124.0 345 28.1
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 4.5e-26 124.0 555 25.4
Sabra16G0282600 Salix brachista HOM05D003636 ORTHO05D005160 4.5e-26 124.0 351 29.1
RcHm_v2.0_Chr5g0000461 Rosa chinensis HOM05D003636 ORTHO05D005160 5.9e-26 123.6 349 29.2
CSS0010332 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 7.7e-26 123.2 538 25.8
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 7.7e-26 123.2 591 25.0
Dinv02719 Davidia involucrata HOM05D003636 ORTHO05D005160 1.0e-25 122.9 351 29.3
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 1.3e-25 122.5 571 25.6
Aa31LG2G11570 Aethionema arabicum HOM05D003636 ORTHO05D005160 1.7e-25 122.1 501 25.7
Ciclev10004498m.g Citrus clementina HOM05D003636 ORTHO05D005160 1.7e-25 122.1 242 33.1
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 1.7e-25 122.1 576 25.0
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 2.2e-25 121.7 312 30.4
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 2.2e-25 121.7 582 24.9
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 2.2e-25 121.7 563 25.2
MCO13G162 Micromonas commoda HOM05D003636 ORTHO05D005160 2.2e-25 121.7 272 30.5
Potri.001G415900 Populus trichocarpa HOM05D003636 ORTHO05D005160 2.2e-25 121.7 242 33.5
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 2.2e-25 121.7 351 30.5
TAR362G1191 Trochodendron aralioides HOM05D003636 ORTHO05D005160 2.2e-25 121.7 516 25.8
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 3.8e-25 120.9 482 25.3
CSS0030608 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 3.8e-25 120.9 551 26.0
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 3.8e-25 120.9 349 29.8
AagrBONN_evm.TU.Sc2ySwM_228.671 Anthoceros agrestis HOM05D003636 ORTHO05D005160 5.0e-25 120.6 283 30.7
CiPaw.02G115900 Carya illinoinensis HOM05D003636 ORTHO05D005160 5.0e-25 120.6 315 31.4
Dinv00242 Davidia involucrata HOM05D003636 ORTHO05D005160 5.0e-25 120.6 351 28.8
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 6.5e-25 120.2 581 24.4
Haze_21469 Corylus avellana HOM05D003636 ORTHO05D005160 1.1e-24 119.4 369 27.6
TPR.G3263 Trifolium pratense HOM05D003636 ORTHO05D005160 1.1e-24 119.4 286 30.1
HPP92_018388 Vanilla planifolia HOM05D003636 ORTHO05D005160 1.1e-24 119.4 318 30.5
DCAR_024229 Daucus carota HOM05D003636 ORTHO05D005160 1.9e-24 118.6 566 26.5
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 1.9e-24 118.6 418 27.0
COL.COLO4_15803 Corchorus olitorius HOM05D003636 ORTHO05D005160 2.5e-24 118.2 578 23.7
Hma1.2p1_1276F.1_g272050 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 3.2e-24 117.9 563 24.0
RcHm_v2.0_Chr4g0390791 Rosa chinensis HOM05D003636 ORTHO05D005160 3.2e-24 117.9 503 26.2
PSO170G0718 Papaver somniferum HOM05D003636 ORTHO05D005160 5.5e-24 117.1 393 27.0
TWI73G0437 Tripterygium wilfordii HOM05D003636 ORTHO05D005160 9.4e-24 116.3 355 28.2
Hund11200 Selenicereus undatus HOM05D003636 ORTHO05D005160 1.2e-23 115.9 402 26.6
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 1.6e-23 115.5 354 28.8
Lj2A972G23 Lonicera japonica HOM05D003636 ORTHO05D005160 2.1e-23 115.2 566 23.9
Hma1.2p1_1798F.1_g302870 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 2.7e-23 114.8 583 24.2
Psat0s986g0040 Pisum sativum HOM05D003636 ORTHO05D005160 2.7e-23 114.8 404 26.0
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 3.6e-23 114.4 452 25.9
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 3.6e-23 114.4 411 25.5
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 1.1e-21 109.4 587 22.8
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 2.0e-21 108.6 297 26.6
FAN12G1487 Fragaria x ananassa HOM05D003636 ORTHO05D005160 6.9e-19 100.1 157 36.9
CiPaw.02G116000 Carya illinoinensis HOM05D003636 ORTHO05D005160 9.1e-19 99.8 207 33.3
Duzib138G1962 Durio zibethinus HOM05D003636 ORTHO05D005160 3.4e-18 97.8 359 26.2
Nn1g02632 Nelumbo nucifera HOM05D003636 ORTHO05D005160 4.5e-18 97.4 289 27.7
Hund02549 Selenicereus undatus HOM05D003636 ORTHO05D005160 4.5e-18 97.4 185 35.1
ATR0681G292 Amborella trichopoda HOM05D003636 ORTHO05D005160 5.9e-18 97.1 245 31.4
THA.LOC104823120 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 1.3e-17 95.9 157 36.3
SpUn1110_0010 Schrenkiella parvula HOM05D003636 ORTHO05D005160 1.7e-17 95.5 149 36.9
Psat2g188400 Pisum sativum HOM05D003636 ORTHO05D005160 2.9e-17 94.7 158 35.4
Psat2g188680 Pisum sativum HOM05D003636 ORTHO05D005160 2.9e-17 94.7 158 35.4
Psat6g220520 Pisum sativum HOM05D003636 ORTHO05D005160 2.9e-17 94.7 158 35.4
THA.LOC104823115 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 8.5e-17 93.2 145 36.6
PRCOL_00006475 Prasinoderma coloniale HOM05D003636 ORTHO05D005160 3.6e-15 87.8 347 26.2
Hma1.2p1_2670F.1_g326620 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 6.3e-12 77.0 121 37.2
EL10Ac2g04632 Beta vulgaris HOM05D003636 ORTHO05D005160 3.5e-10 71.2 121 34.7
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 3.5e-10 71.2 183 28.4
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 2.2e-09 68.6 213 25.8
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 2.9e-09 68.2 205 25.9
Rhsim10G0205300 Rhododendron simsii HOM05D003636 ORTHO05D005160 3.8e-09 67.8 135 33.3
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 7.2e-08 63.5 218 22.5
Actinidia05462 Actinidia chinensis HOM05D003636 ORTHO05D005160 9.4e-08 63.2 421 24.2


User provided reference genes

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