Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026315 Carpinus fangiana HOM05D000075 ORTHO05D124058 3.2e-259 897.9 449 100.0
CBR_g30855 Chara braunii HOM05D000075 ORTHO05D000264 8.7e-15 85.9 71 50.7
CBR_g52001 Chara braunii HOM05D000075 ORTHO05D000264 2.0e-11 74.7 69 49.3
ATR0661G247 Amborella trichopoda HOM05D000075 ORTHO05D000073 2.7e-08 64.3 74 43.2
FAN18G4175 Fragaria x ananassa HOM05D000075 ORTHO05D000073 2.7e-08 64.3 76 36.8
GSVIVG01008013001 Vitis vinifera HOM05D000075 ORTHO05D000073 7.9e-08 62.8 73 42.5
AagrBONN_evm.TU.Sc2ySwM_117.162 Anthoceros agrestis HOM05D001872 ORTHO05D001859 1.0e-07 62.4 57 45.6
Duzib093G1194 Durio zibethinus HOM05D000075 ORTHO05D000073 1.0e-07 62.4 73 43.8
FAN08G0041 Fragaria x ananassa HOM05D000075 ORTHO05D000073 1.0e-07 62.4 70 41.4
AT2G29480 Arabidopsis thaliana HOM05D000075 ORTHO05D000073 1.3e-07 62.0 74 39.2
Carub.0004s1053 Capsella rubella HOM05D000075 ORTHO05D000073 1.3e-07 62.0 74 39.2
Cc03_g14900 Coffea canephora HOM05D000075 ORTHO05D000073 1.3e-07 62.0 68 45.6
Ah.11g048510 Amaranthus hybridus HOM05D000075 ORTHO05D000073 1.8e-07 61.6 76 40.8
MELO3C001977.2 Cucumis melo HOM05D000075 ORTHO05D000073 1.8e-07 61.6 75 38.7
FvH4_5g15120 Fragaria vesca HOM05D000075 ORTHO05D000073 1.8e-07 61.6 70 38.6
QL03p064128 Quercus lobata HOM05D000075 ORTHO05D000073 1.8e-07 61.6 74 40.5
arahy.Tifrunner.gnm1.ann1.JL3DG7 Arachis hypogaea HOM05D000075 ORTHO05D000073 2.3e-07 61.2 80 43.8
A04p22500 Brassica napus HOM05D000075 ORTHO05D000073 2.3e-07 61.2 74 39.2
FvH4_5g15121 Fragaria vesca HOM05D000075 ORTHO05D000073 2.3e-07 61.2 70 41.4
Prupe.1G039900 Prunus persica HOM05D000075 ORTHO05D000073 2.3e-07 61.2 68 44.1
Hund25372 Selenicereus undatus HOM05D000075 ORTHO05D000073 2.3e-07 61.2 70 47.1
Ciclev10005809m.g Citrus clementina HOM05D000075 ORTHO05D000073 3.0e-07 60.8 61 45.9
Prupe.5G191500 Prunus persica HOM05D000075 ORTHO05D000073 3.0e-07 60.8 75 38.7
Sed0016489 Sechium edule HOM05D000075 ORTHO05D000073 3.0e-07 60.8 75 36.0
Lj5g0014734 Lotus japonicus HOM05D000075 ORTHO05D000073 3.9e-07 60.5 68 48.5
QL03p063336 Quercus lobata HOM05D000075 ORTHO05D000073 3.9e-07 60.5 74 40.5
SEGI_28152 Sequoiadendron giganteum HOM05D000075 ORTHO05D000264 3.9e-07 60.5 83 36.1
TAR629G1101 Trochodendron aralioides HOM05D000075 ORTHO05D000073 3.9e-07 60.5 68 45.6
Ciclev10006901m.g Citrus clementina HOM05D000075 ORTHO05D000073 5.1e-07 60.1 72 41.7
Haze_12015 Corylus avellana HOM05D000075 ORTHO05D000073 5.1e-07 60.1 75 38.7
QL03p064153 Quercus lobata HOM05D000075 ORTHO05D000073 5.1e-07 60.1 74 39.2
SalBow7G4640 Salvia bowleyana HOM05D000075 ORTHO05D000073 5.1e-07 60.1 68 44.1
SEGI_24381 Sequoiadendron giganteum HOM05D000075 ORTHO05D000264 5.1e-07 60.1 82 36.6
arahy.Tifrunner.gnm1.ann1.QMC108 Arachis hypogaea HOM05D000075 ORTHO05D000073 6.7e-07 59.7 80 36.2
BcaC02g08083 Brassica carinata HOM05D000075 ORTHO05D000073 6.7e-07 59.7 74 37.8
C04p58630 Brassica napus HOM05D000075 ORTHO05D000073 6.7e-07 59.7 74 37.8
MELO3C003200.2 Cucumis melo HOM05D000075 ORTHO05D000073 6.7e-07 59.7 78 41.0
FAN04G0552 Fragaria x ananassa HOM05D000075 ORTHO05D000073 6.7e-07 59.7 70 40.0
Phvul.009G187800 Phaseolus vulgaris HOM05D000075 ORTHO05D000073 6.7e-07 59.7 75 38.7
Sabra08G0127500 Salix brachista HOM05D000075 ORTHO05D000073 6.7e-07 59.7 72 41.7
Sed0000403 Sechium edule HOM05D000075 ORTHO05D000073 6.7e-07 59.7 75 34.7
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 8.7e-07 59.3 68 41.2
EL10Ac3g06743 Beta vulgaris HOM05D000075 ORTHO05D000073 1.1e-06 58.9 77 44.2
DCAR_027680 Daucus carota HOM05D001872 ORTHO05D001859 1.1e-06 58.9 60 43.3
Gohir.D02G035000 Gossypium hirsutum HOM05D000075 ORTHO05D000073 1.1e-06 58.9 72 41.7
Lj5g0020161 Lotus japonicus HOM05D000075 ORTHO05D000073 1.1e-06 58.9 72 41.7
Lalb_Chr06g0163991 Lupinus albus HOM05D000075 ORTHO05D000073 1.1e-06 58.9 72 45.8
QL09p043207 Quercus lobata HOM05D000075 ORTHO05D000073 1.1e-06 58.9 72 40.3
SalBow4G2765 Salvia bowleyana HOM05D000075 ORTHO05D000073 1.1e-06 58.9 68 42.6
arahy.Tifrunner.gnm1.ann1.T8CK68 Arachis hypogaea HOM05D000075 ORTHO05D000073 1.5e-06 58.5 75 42.7
Ciclev10005808m.g Citrus clementina HOM05D000075 ORTHO05D000073 1.5e-06 58.5 71 40.8
FvH4_4g05360 Fragaria vesca HOM05D000075 ORTHO05D000073 1.5e-06 58.5 68 44.1
FAN12G0112 Fragaria x ananassa HOM05D000075 ORTHO05D000073 1.5e-06 58.5 68 44.1
FAN15G2910 Fragaria x ananassa HOM05D000075 ORTHO05D000073 1.5e-06 58.5 72 41.7
Gohir.D03G120800 Gossypium hirsutum HOM05D000075 ORTHO05D000073 1.5e-06 58.5 73 39.7
Gohir.D03G121433 Gossypium hirsutum HOM05D000075 ORTHO05D000073 1.5e-06 58.5 73 39.7
Gorai.003G127600 Gossypium raimondii HOM05D000075 ORTHO05D000073 1.5e-06 58.5 73 39.7
Lalb_Chr02g0144001 Lupinus albus HOM05D001872 ORTHO05D001859 1.5e-06 58.5 65 41.5
Lalb_Chr25g0285291 Lupinus albus HOM05D000075 ORTHO05D000264 1.5e-06 58.5 77 37.7
Nitab4.5_0004704g0060 Nicotiana tabacum HOM05D000075 ORTHO05D000073 1.5e-06 58.5 73 38.4
Peaxi162Scf00103g00316 Petunia axillaris HOM05D000075 ORTHO05D000073 1.5e-06 58.5 73 38.4
PGR004G2636 Punica granatum HOM05D000075 ORTHO05D000073 1.5e-06 58.5 72 41.7
Sed0010061 Sechium edule HOM05D000075 ORTHO05D000073 1.5e-06 58.5 79 34.2
Sed0014069 Sechium edule HOM05D000075 ORTHO05D000073 1.5e-06 58.5 61 47.5
Thecc.09G312100 Theobroma cacao HOM05D000075 ORTHO05D000073 1.5e-06 58.5 72 44.4
VMungo0720G1007 Vigna mungo HOM05D000075 ORTHO05D000073 1.5e-06 58.5 61 49.2
Zm00001eb141060 Zea mays HOM05D000075 ORTHO05D000073 1.5e-06 58.5 68 45.6
ATR0620G011 Amborella trichopoda HOM05D000075 ORTHO05D000073 1.9e-06 58.2 73 42.5
arahy.Tifrunner.gnm1.ann1.J9K9L3 Arachis hypogaea HOM05D000075 ORTHO05D000073 1.9e-06 58.2 76 38.2
BcaB06g28314 Brassica carinata HOM05D000075 ORTHO05D000073 1.9e-06 58.2 74 36.5
CARHR083630 Cardamine hirsuta HOM05D000075 ORTHO05D000073 1.9e-06 58.2 76 42.1
AUR62021696 Chenopodium quinoa HOM05D000075 ORTHO05D000073 1.9e-06 58.2 68 45.6
Ciclev10005812m.g Citrus clementina HOM05D000075 ORTHO05D000073 1.9e-06 58.2 71 40.8
CsaV3_3G011430 Cucumis sativus L. HOM05D000075 ORTHO05D000073 1.9e-06 58.2 76 40.8
FvH4_5g15020 Fragaria vesca HOM05D000075 ORTHO05D000073 1.9e-06 58.2 72 38.9
FAN18G3504 Fragaria x ananassa HOM05D000075 ORTHO05D000073 1.9e-06 58.2 72 38.9
Gohir.A03G046400 Gossypium hirsutum HOM05D000075 ORTHO05D000073 1.9e-06 58.2 73 39.7
Lalb_Chr06g0169741 Lupinus albus HOM05D000075 ORTHO05D000073 1.9e-06 58.2 74 40.5
PSO339G0199 Papaver somniferum HOM05D001872 ORTHO05D001859 1.9e-06 58.2 57 43.9
PSO384G3366 Papaver somniferum HOM05D001872 ORTHO05D001859 1.9e-06 58.2 57 43.9
PGR102G0090 Punica granatum HOM05D000075 ORTHO05D000073 1.9e-06 58.2 74 39.2
Sed0012957 Sechium edule HOM05D000075 ORTHO05D000073 1.9e-06 58.2 73 42.5
Sc04g0008150 Simmondsia chinensis HOM05D000075 ORTHO05D000073 1.9e-06 58.2 72 38.9
THA.LOC104815796 Tarenaya hassleriana HOM05D000075 ORTHO05D000073 1.9e-06 58.2 72 34.7
ATR0620G084 Amborella trichopoda HOM05D000075 ORTHO05D000073 2.5e-06 57.8 75 40.0
Ca_06872_v3 Cicer arietinum L. HOM05D000075 ORTHO05D000073 2.5e-06 57.8 70 42.9
Cc03_g05550 Coffea canephora HOM05D000075 ORTHO05D000073 2.5e-06 57.8 68 42.6
COL.COLO4_18606 Corchorus olitorius HOM05D000075 ORTHO05D000073 2.5e-06 57.8 72 43.1
MELO3C006350.2 Cucumis melo HOM05D000075 ORTHO05D000073 2.5e-06 57.8 76 42.1
Dinv31405 Davidia involucrata HOM05D001872 ORTHO05D001859 2.5e-06 57.8 65 38.5
Glyma.06G193500 Glycine max HOM05D000075 ORTHO05D000073 2.5e-06 57.8 75 37.3
Peaxi162Scf00103g00212 Petunia axillaris HOM05D000075 ORTHO05D000073 2.5e-06 57.8 73 38.4
Sed0024232 Sechium edule HOM05D000075 ORTHO05D000073 2.5e-06 57.8 73 42.5
VMungo1309G0945 Vigna mungo HOM05D000075 ORTHO05D000073 2.5e-06 57.8 72 38.9
AL4G24060 Arabidopsis lyrata HOM05D000075 ORTHO05D000073 3.3e-06 57.4 78 35.9
arahy.Tifrunner.gnm1.ann1.B496DS Arachis hypogaea HOM05D000075 ORTHO05D000073 3.3e-06 57.4 72 41.7
arahy.Tifrunner.gnm1.ann1.DF20BV Arachis hypogaea HOM05D000075 ORTHO05D000073 3.3e-06 57.4 75 41.3
arahy.Tifrunner.gnm1.ann1.R8YQMP Arachis hypogaea HOM05D000075 ORTHO05D000073 3.3e-06 57.4 72 41.7
CANSAT56G2969 Cannabis sativa HOM05D001872 ORTHO05D001859 3.3e-06 57.4 65 40.0
CANSAT56G3707 Cannabis sativa HOM05D001872 ORTHO05D001859 3.3e-06 57.4 65 40.0
COL.COLO4_23011 Corchorus olitorius HOM05D000075 ORTHO05D000073 3.3e-06 57.4 73 41.1
CsaV3_1G005420 Cucumis sativus L. HOM05D000075 ORTHO05D000073 3.3e-06 57.4 70 40.0
Glyma.20G101100 Glycine max HOM05D000075 ORTHO05D000073 3.3e-06 57.4 61 49.2
Lj1g0022974 Lotus japonicus HOM05D000075 ORTHO05D000073 3.3e-06 57.4 71 42.3
Lj5g0001191 Lotus japonicus HOM05D001872 ORTHO05D001859 3.3e-06 57.4 58 43.1
Medtr3g099757 Medicago truncatula HOM05D000075 ORTHO05D000073 3.3e-06 57.4 77 39.0
Nitab4.5_0001503g0120 Nicotiana tabacum HOM05D000075 ORTHO05D000073 3.3e-06 57.4 74 40.5
PSO081G0016 Papaver somniferum HOM05D000075 ORTHO05D000073 3.3e-06 57.4 72 41.7
vmacro07140 Vaccinium macrocarpon HOM05D001872 ORTHO05D001859 3.3e-06 57.4 65 36.9
Zm00001eb021690 Zea mays HOM05D000075 ORTHO05D000073 3.3e-06 57.4 77 40.3
arahy.Tifrunner.gnm1.ann1.1PW7ZW Arachis hypogaea HOM05D000075 ORTHO05D000073 4.3e-06 57.0 75 44.0
Carub.0004s1054 Capsella rubella HOM05D000075 ORTHO05D000073 4.3e-06 57.0 74 36.5
CAN.G1315.1 Capsicum annuum HOM05D000075 ORTHO05D000073 4.3e-06 57.0 73 38.4
Cpa.g.sc44.56 Carica papaya HOM05D000075 ORTHO05D000073 4.3e-06 57.0 73 39.7
CiPaw.11G043800 Carya illinoinensis HOM05D000075 ORTHO05D000073 4.3e-06 57.0 75 38.7
CsaV3_4G025750 Cucumis sativus L. HOM05D000075 ORTHO05D000073 4.3e-06 57.0 73 42.5
Thhalv10021472m.g Eutrema salsugineum HOM05D000075 ORTHO05D000073 4.3e-06 57.0 76 42.1
Mapoly0082s0046 Marchantia polymorpha HOM05D001872 ORTHO05D001859 4.3e-06 57.0 57 42.1
Nn2g10511 Nelumbo nucifera HOM05D001872 ORTHO05D001859 4.3e-06 57.0 61 41.0
Nitab4.5_0000026g0030 Nicotiana tabacum HOM05D000075 ORTHO05D000073 4.3e-06 57.0 73 38.4
Potri.010G061100 Populus trichocarpa HOM05D000075 ORTHO05D000073 4.3e-06 57.0 76 38.2
QL07p028270 Quercus lobata HOM05D000075 ORTHO05D000073 4.3e-06 57.0 73 42.5
Solyc03g116120.3 Solanum lycopersicum HOM05D000075 ORTHO05D000073 4.3e-06 57.0 73 38.4
Sopen03g035090 Solanum pennellii HOM05D000075 ORTHO05D000073 4.3e-06 57.0 73 38.4
TWI81G0222 Tripterygium wilfordii HOM05D000075 ORTHO05D000073 4.3e-06 57.0 73 38.4
AL3G20390 Arabidopsis lyrata HOM05D000075 ORTHO05D000073 5.7e-06 56.6 76 40.8
AL4G24180 Arabidopsis lyrata HOM05D000075 ORTHO05D000073 5.7e-06 56.6 74 36.5
AT2G29490 Arabidopsis thaliana HOM05D000075 ORTHO05D000073 5.7e-06 56.6 74 36.5
arahy.Tifrunner.gnm1.ann1.H6BXSR Arachis hypogaea HOM05D000075 ORTHO05D000264 5.7e-06 56.6 77 36.4
arahy.Tifrunner.gnm1.ann1.QIF50Y Arachis hypogaea HOM05D000075 ORTHO05D000264 5.7e-06 56.6 77 36.4
A04p22430 Brassica napus HOM05D000075 ORTHO05D000073 5.7e-06 56.6 74 37.8
BraA04t17791Z Brassica rapa HOM05D000075 ORTHO05D000073 5.7e-06 56.6 74 37.8
Cpa.g.sc17.237 Carica papaya HOM05D000075 ORTHO05D000073 5.7e-06 56.6 75 36.0
CiPaw.06G084400 Carya illinoinensis HOM05D000075 ORTHO05D000073 5.7e-06 56.6 74 40.5
CiPaw.06G084600 Carya illinoinensis HOM05D000075 ORTHO05D000073 5.7e-06 56.6 75 38.7
CiPaw.08G059000 Carya illinoinensis HOM05D000075 ORTHO05D000073 5.7e-06 56.6 79 39.2
CiPaw.11G044100 Carya illinoinensis HOM05D000075 ORTHO05D000073 5.7e-06 56.6 75 36.0
Ciclev10006959m.g Citrus clementina HOM05D000075 ORTHO05D000073 5.7e-06 56.6 71 39.4
Ciclev10030408m.g Citrus clementina HOM05D000075 ORTHO05D000073 5.7e-06 56.6 76 34.2
PGR102G1571 Punica granatum HOM05D000075 ORTHO05D000073 5.7e-06 56.6 74 37.8
QL03p063308 Quercus lobata HOM05D000075 ORTHO05D000073 5.7e-06 56.6 70 38.6
QL09p043182 Quercus lobata HOM05D000075 ORTHO05D000073 5.7e-06 56.6 72 41.7
SMO201G0198 Selaginella moellendorffii HOM05D001872 ORTHO05D001859 5.7e-06 56.6 57 43.9
SEGI_32480 Sequoiadendron giganteum HOM05D000075 ORTHO05D000264 5.7e-06 56.6 82 35.4
THA.LOC104809212 Tarenaya hassleriana HOM05D000075 ORTHO05D000073 5.7e-06 56.6 74 39.2
BcaC02g08086 Brassica carinata HOM05D000075 ORTHO05D000073 7.4e-06 56.2 74 37.8
C04p58580 Brassica napus HOM05D000075 ORTHO05D000073 7.4e-06 56.2 74 37.8
CARHR067860 Cardamine hirsuta HOM05D000075 ORTHO05D000073 7.4e-06 56.2 70 38.6
CiPaw.06G084500 Carya illinoinensis HOM05D000075 ORTHO05D000073 7.4e-06 56.2 74 40.5
Haze_20896 Corylus avellana HOM05D000075 ORTHO05D000073 7.4e-06 56.2 72 40.3
MELO3C028183.2 Cucumis melo HOM05D000075 ORTHO05D000073 7.4e-06 56.2 62 43.5
FAN04G2615 Fragaria x ananassa HOM05D000075 ORTHO05D000073 7.4e-06 56.2 72 37.5
FAN08G0390 Fragaria x ananassa HOM05D000075 ORTHO05D000073 7.4e-06 56.2 72 37.5
FAN08G1865 Fragaria x ananassa HOM05D000075 ORTHO05D000073 7.4e-06 56.2 70 38.6
Nitab4.5_0000026g0020 Nicotiana tabacum HOM05D000075 ORTHO05D000073 7.4e-06 56.2 75 37.3
PSO170G3133 Papaver somniferum HOM05D000075 ORTHO05D000073 7.4e-06 56.2 74 36.5
PSO339G1027 Papaver somniferum HOM05D001872 ORTHO05D001859 7.4e-06 56.2 57 43.9
Rhsim04G0181100 Rhododendron simsii HOM05D000075 ORTHO05D000073 7.4e-06 56.2 72 41.7
SalBow2G3207 Salvia bowleyana HOM05D000075 ORTHO05D000073 7.4e-06 56.2 68 35.3
Sp4g12180 Schrenkiella parvula HOM05D000075 ORTHO05D000073 7.4e-06 56.2 74 36.5
SEGI_21760 Sequoiadendron giganteum HOM05D000075 ORTHO05D000264 7.4e-06 56.2 82 36.6
AagrBONN_evm.TU.Sc2ySwM_344.4788 Anthoceros agrestis HOM05D001872 ORTHO05D001859 9.6e-06 55.8 67 40.3
AL4G24020 Arabidopsis lyrata HOM05D000075 ORTHO05D000073 9.6e-06 55.8 75 34.7
AL4G24190 Arabidopsis lyrata HOM05D000075 ORTHO05D000073 9.6e-06 55.8 74 36.5
MSTRG.23856 Avicennia marina HOM05D000075 ORTHO05D000073 9.6e-06 55.8 61 47.5
MSTRG.8236 Avicennia marina HOM05D001872 ORTHO05D001859 9.6e-06 55.8 65 38.5
BolC4t27384H Brassica oleracea HOM05D000075 ORTHO05D000073 9.6e-06 55.8 72 37.5
Ciclev10029241m.g Citrus clementina HOM05D000075 ORTHO05D000073 9.6e-06 55.8 72 34.7
Cc03_g05560 Coffea canephora HOM05D000075 ORTHO05D000073 9.6e-06 55.8 68 42.6
FvH4_5g15100 Fragaria vesca HOM05D000075 ORTHO05D000073 9.6e-06 55.8 75 34.7
Lj3A629T10 Lonicera japonica HOM05D000075 ORTHO05D000073 9.6e-06 55.8 72 41.7
Lju682A8G12 Lonicera japonica HOM05D000075 ORTHO05D000073 9.6e-06 55.8 72 41.7
Lj1g0027340 Lotus japonicus HOM05D000075 ORTHO05D000073 9.6e-06 55.8 61 42.6
Nitab4.5_0000408g0080 Nicotiana tabacum HOM05D000075 ORTHO05D000073 9.6e-06 55.8 69 39.1
Nitab4.5_0000641g0050 Nicotiana tabacum HOM05D000075 ORTHO05D000073 9.6e-06 55.8 73 38.4
Pp3c15_21480 Physcomitrium patens HOM05D001872 ORTHO05D001859 9.6e-06 55.8 67 40.3
Prupe.5G192500 Prunus persica HOM05D000075 ORTHO05D000073 9.6e-06 55.8 74 36.5
Prupe.8G210300 Prunus persica HOM05D000075 ORTHO05D000073 9.6e-06 55.8 72 38.9
PGR004G0478 Punica granatum HOM05D000075 ORTHO05D000073 9.6e-06 55.8 73 38.4
QL07p028275 Quercus lobata HOM05D000075 ORTHO05D000073 9.6e-06 55.8 85 37.6
SalBow2G0423 Salvia bowleyana HOM05D000075 ORTHO05D000073 9.6e-06 55.8 68 36.8
Sp4g12210 Schrenkiella parvula HOM05D000075 ORTHO05D000073 9.6e-06 55.8 74 37.8


User provided reference genes

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