Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 0.0e+00 1533.1 777 100.0
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.5e-09 69.3 152 31.6
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 2.5e-09 68.6 147 31.3
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 2.5e-09 68.6 147 31.3
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.5e-09 68.6 147 32.0
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.5e-09 68.6 130 33.1
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 2.5e-09 68.6 142 36.6
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 4.2e-09 67.8 147 32.0
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 4.2e-09 67.8 131 35.9
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 5.5e-09 67.4 122 36.1
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 5.5e-09 67.4 147 30.6
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 5.5e-09 67.4 131 32.8
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 7.2e-09 67.0 123 38.2
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 7.2e-09 67.0 152 32.9
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 9.5e-09 66.6 159 31.4
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.2e-08 66.2 158 31.0
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 1.2e-08 66.2 132 33.3
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.2e-08 66.2 152 31.6
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.6e-08 65.9 128 35.9
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.1e-08 65.5 163 31.9
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 2.1e-08 65.5 147 29.9
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.1e-08 65.5 142 31.0
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 2.1e-08 65.5 131 37.4
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 3.6e-08 64.7 147 29.3
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 3.6e-08 64.7 135 30.4
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 4.7e-08 64.3 127 34.6
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 6.1e-08 63.9 128 34.4
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 6.1e-08 63.9 135 34.1
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 8.0e-08 63.5 128 34.4
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 8.0e-08 63.5 158 30.4
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 8.0e-08 63.5 158 30.4
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 8.0e-08 63.5 121 33.9
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 8.0e-08 63.5 121 33.9
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 8.0e-08 63.5 134 36.6
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 8.0e-08 63.5 134 36.6
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 8.0e-08 63.5 131 33.6
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 8.0e-08 63.5 134 35.1
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.0e-07 63.2 151 31.8
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.0e-07 63.2 153 30.7
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.0e-07 63.2 141 29.8
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 1.0e-07 63.2 126 32.5
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.4e-07 62.8 158 30.4
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.4e-07 62.8 158 30.4
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 1.4e-07 62.8 234 28.2
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.4e-07 62.8 147 29.3
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.4e-07 62.8 125 32.8
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.8e-07 62.4 131 34.4
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.8e-07 62.4 121 33.9
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.8e-07 62.4 121 33.1
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 2.3e-07 62.0 121 33.9
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 2.3e-07 62.0 134 32.8
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 2.3e-07 62.0 133 31.6
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 3.0e-07 61.6 121 33.1
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 3.0e-07 61.6 122 35.2
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 4.0e-07 61.2 128 31.2
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 4.0e-07 61.2 124 33.1
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 4.0e-07 61.2 122 34.4
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 4.0e-07 61.2 126 32.5
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 4.0e-07 61.2 124 32.3
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 5.2e-07 60.8 57 45.6
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 6.8e-07 60.5 122 34.4
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 6.8e-07 60.5 125 32.0
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 6.8e-07 60.5 147 31.3
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 8.8e-07 60.1 122 32.0
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 8.8e-07 60.1 131 31.3
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 8.8e-07 60.1 121 33.1
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 1.2e-06 59.7 114 33.3
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.2e-06 59.7 121 33.9
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.2e-06 59.7 41 51.2
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.2e-06 59.7 143 30.8
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.2e-06 59.7 131 33.6
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.2e-06 59.7 122 34.4
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.2e-06 59.7 122 34.4
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.2e-06 59.7 121 33.1
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.2e-06 59.7 121 33.1
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.5e-06 59.3 122 32.0
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.5e-06 59.3 133 30.8
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.5e-06 59.3 121 31.4
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.5e-06 59.3 126 33.3
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 1.5e-06 59.3 124 34.7
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.0e-06 58.9 122 31.1
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 2.6e-06 58.5 152 28.9
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.6e-06 58.5 39 53.8
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.6e-06 58.5 39 53.8
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 2.6e-06 58.5 116 34.5
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 2.6e-06 58.5 135 33.3
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 3.4e-06 58.2 122 33.6
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 3.4e-06 58.2 97 35.1
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 3.4e-06 58.2 130 32.3
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 4.4e-06 57.8 71 42.3
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.4e-06 57.8 124 33.9
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 5.7e-06 57.4 122 33.6
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 5.7e-06 57.4 123 30.9
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 5.7e-06 57.4 122 32.8
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 5.7e-06 57.4 122 34.4
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 5.7e-06 57.4 142 30.3
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 5.7e-06 57.4 40 52.5
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 9.8e-06 56.6 38 50.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 9.8e-06 56.6 119 33.6
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 9.8e-06 56.6 127 32.3
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 9.8e-06 56.6 131 29.8
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 9.8e-06 56.6 131 29.8
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 9.8e-06 56.6 41 51.2
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 9.8e-06 56.6 131 32.1


User provided reference genes

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