Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 0.0e+00 1812.3 1012 100.0
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 2.8e-13 82.0 161 31.7
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.6e-11 76.3 161 31.1
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.6e-11 76.3 209 27.3
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 2.9e-10 72.0 161 29.2
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 2.9e-10 72.0 288 25.3
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 6.5e-10 70.9 214 29.4
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 6.5e-10 70.9 216 28.7
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 6.5e-10 70.9 190 26.8
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 1.1e-09 70.1 161 29.2
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.1e-09 70.1 162 28.4
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.5e-09 69.7 235 23.8
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.5e-09 69.7 393 20.1
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.5e-09 69.7 161 30.4
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.9e-09 69.3 161 29.8
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.9e-09 69.3 161 29.8
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.9e-09 69.3 306 24.5
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.9e-09 69.3 161 28.6
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.9e-09 69.3 161 29.2
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.9e-09 69.3 187 27.8
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 2.5e-09 68.9 161 28.6
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 3.2e-09 68.6 581 20.7
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 3.2e-09 68.6 122 34.4
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 3.2e-09 68.6 162 27.2
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.2e-09 68.6 161 29.8
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 7.2e-09 67.4 161 31.1
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 9.4e-09 67.0 163 28.2
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 9.4e-09 67.0 161 28.6
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.2e-08 66.6 161 28.0
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.2e-08 66.6 153 32.7
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 1.2e-08 66.6 121 31.4
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.2e-08 66.6 119 33.6
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.6e-08 66.2 457 21.7
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 1.6e-08 66.2 235 24.3
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 2.1e-08 65.9 161 28.6
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 2.7e-08 65.5 127 29.9
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 2.7e-08 65.5 460 19.8
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.6e-08 65.1 131 33.6
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 3.6e-08 65.1 610 20.3
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.7e-08 64.7 308 23.7
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 4.7e-08 64.7 162 27.2
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.7e-08 64.7 162 27.2
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.7e-08 64.7 162 27.2
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 4.7e-08 64.7 373 23.1
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 6.1e-08 64.3 360 23.9
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 6.1e-08 64.3 120 30.8
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 6.1e-08 64.3 130 31.5
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 8.0e-08 63.9 122 32.0
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.0e-07 63.5 161 27.3
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.4e-07 63.2 122 30.3
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 1.4e-07 63.2 161 27.3
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.8e-07 62.8 459 20.7
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.8e-07 62.8 161 28.0
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 1.8e-07 62.8 119 31.9
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.8e-07 62.8 161 27.3
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.8e-07 62.8 161 27.3
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-07 62.0 162 26.5
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 3.0e-07 62.0 344 21.2
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 4.0e-07 61.6 127 29.1
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 4.0e-07 61.6 122 36.1
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 4.0e-07 61.6 161 28.0
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 4.0e-07 61.6 122 32.8
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 4.0e-07 61.6 119 31.1
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 5.2e-07 61.2 364 22.3
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 5.2e-07 61.2 132 30.3
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 5.2e-07 61.2 272 24.3
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 5.2e-07 61.2 302 25.5
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 5.2e-07 61.2 119 31.1
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 6.8e-07 60.8 343 23.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 6.8e-07 60.8 132 29.5
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 6.8e-07 60.8 107 32.7
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 6.8e-07 60.8 161 26.7
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 8.8e-07 60.5 183 26.8
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 8.8e-07 60.5 163 27.0
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.2e-06 60.1 128 32.0
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 1.2e-06 60.1 146 28.1
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 1.2e-06 60.1 122 30.3
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.2e-06 60.1 122 31.1
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-06 59.7 183 26.8
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.5e-06 59.7 122 30.3
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.6e-06 58.9 351 23.4
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.6e-06 58.9 161 27.3
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 3.4e-06 58.5 122 31.1
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 3.4e-06 58.5 122 31.1
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 3.4e-06 58.5 123 31.7
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 5.7e-06 57.8 122 30.3
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 5.7e-06 57.8 179 26.3
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 5.7e-06 57.8 120 29.2
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 9.8e-06 57.0 123 30.9


User provided reference genes

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