Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 4.0e-44 181.0 91 100.0
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 4.2e-33 144.4 91 83.5
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.0e-31 139.8 75 93.3
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 1.0e-31 139.8 75 93.3
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 1.0e-31 139.8 75 93.3
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 1.3e-31 139.4 73 94.5
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 2.6e-27 125.2 74 82.4
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 3.4e-27 124.8 74 82.4
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 5.8e-27 124.0 76 82.9
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 2.2e-26 122.1 69 87.0
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 4.9e-26 120.9 71 87.3
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 6.5e-26 120.6 71 85.9
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 8.4e-26 120.2 78 78.2
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 1.4e-25 119.4 70 81.4
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 4.2e-25 117.9 78 75.6
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 7.1e-25 117.1 67 82.1
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 7.1e-25 117.1 67 82.1
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 7.1e-25 117.1 75 76.0
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 9.3e-25 116.7 79 73.4
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.3e-25 116.7 70 80.0
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 9.3e-25 116.7 67 82.1
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.2e-24 116.3 70 80.0
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.2e-24 116.3 70 80.0
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.6e-24 115.9 67 80.6
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-24 115.9 70 78.6
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.6e-24 115.9 65 81.5
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.6e-24 115.9 65 81.5
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 1.6e-24 115.9 75 70.7
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 2.1e-24 115.5 67 77.6
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 2.1e-24 115.5 66 81.8
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 2.1e-24 115.5 66 81.8
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 2.1e-24 115.5 70 80.0
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 2.7e-24 115.2 67 79.1
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 2.7e-24 115.2 67 80.6
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 2.7e-24 115.2 67 80.6
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 2.7e-24 115.2 69 78.3
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.7e-24 115.2 66 80.3
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 2.7e-24 115.2 67 82.1
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 2.7e-24 115.2 67 79.1
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 2.7e-24 115.2 73 72.6
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 3.5e-24 114.8 67 82.1
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 3.5e-24 114.8 69 79.7
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 3.5e-24 114.8 67 82.1
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 3.5e-24 114.8 67 77.6
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.5e-24 114.8 66 83.3
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.5e-24 114.8 70 78.6
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 3.5e-24 114.8 70 78.6
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 3.5e-24 114.8 66 81.8
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 3.5e-24 114.8 67 77.6
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 3.5e-24 114.8 67 77.6
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 4.6e-24 114.4 67 80.6
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 4.6e-24 114.4 70 78.6
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 4.6e-24 114.4 66 81.8
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 4.6e-24 114.4 72 73.6
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 6.0e-24 114.0 67 77.6
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 6.0e-24 114.0 69 78.3
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 6.0e-24 114.0 72 76.4
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 6.0e-24 114.0 67 80.6
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 6.0e-24 114.0 67 79.1
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 7.9e-24 113.6 88 63.6
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.0e-23 113.2 66 81.8
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 1.0e-23 113.2 67 80.6
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 1.0e-23 113.2 67 80.6
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.3e-23 112.8 66 77.3
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.3e-23 112.8 67 76.1
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 1.3e-23 112.8 67 79.1
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 1.3e-23 112.8 66 78.8
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 1.3e-23 112.8 67 76.1
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.8e-23 112.5 68 76.5
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 1.8e-23 112.5 69 76.8
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 2.3e-23 112.1 68 76.5
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 2.3e-23 112.1 64 78.1
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 2.3e-23 112.1 70 75.7
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 3.0e-23 111.7 68 76.5
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 3.0e-23 111.7 66 80.3
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 3.0e-23 111.7 66 80.3
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.0e-23 111.7 64 82.8
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 3.0e-23 111.7 64 82.8
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 3.9e-23 111.3 70 75.7
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 3.9e-23 111.3 73 71.2
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 5.1e-23 110.9 66 77.3
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 5.1e-23 110.9 66 77.3
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 8.7e-23 110.2 69 73.9
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 8.7e-23 110.2 67 74.6
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 8.7e-23 110.2 66 78.8
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 8.7e-23 110.2 66 78.8
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 8.7e-23 110.2 69 73.9
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 8.7e-23 110.2 78 71.8
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 1.1e-22 109.8 70 72.9
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 1.9e-22 109.0 67 76.1
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 1.9e-22 109.0 69 71.0
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 2.5e-22 108.6 68 73.5
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 2.5e-22 108.6 68 72.1
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 4.3e-22 107.8 68 70.6
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 4.3e-22 107.8 68 72.1
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 5.7e-22 107.5 67 73.1
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 7.4e-22 107.1 69 73.9
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 7.4e-22 107.1 64 76.6
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 1.3e-21 106.3 68 72.1
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 1.6e-21 105.9 68 72.1
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 1.6e-21 105.9 68 69.1
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.6e-21 105.9 67 71.6
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 2.2e-21 105.5 68 69.1
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 2.2e-21 105.5 68 69.1
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 2.2e-21 105.5 68 72.1
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 2.2e-21 105.5 68 69.1
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 2.8e-21 105.1 70 70.0
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 3.7e-21 104.8 68 70.6
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 3.7e-21 104.8 68 70.6
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 3.7e-21 104.8 68 70.6
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 3.7e-21 104.8 70 70.0
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 6.3e-21 104.0 64 73.4
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 6.3e-21 104.0 70 68.6
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 1.1e-20 103.2 69 71.0
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.4e-20 102.1 60 80.0
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 1.5e-19 99.4 83 62.7
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 1.7e-18 95.9 102 50.0
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 2.3e-15 85.5 49 79.6
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.9e-15 84.7 50 74.0
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 2.5e-14 82.0 59 64.4
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 1.4e-12 76.3 39 79.5
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 1.8e-12 75.9 39 79.5
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 2.4e-12 75.5 63 52.4
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 9.1e-12 73.6 70 54.3
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.1e-09 66.6 39 84.6
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.4e-09 66.2 39 69.2
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 4.2e-09 64.7 35 74.3
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 4.2e-09 64.7 37 67.6
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 4.2e-09 64.7 37 67.6
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 1.6e-08 62.8 50 58.0
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 1.6e-08 62.8 50 58.0
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 2.7e-08 62.0 62 50.0
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 1.0e-07 60.1 58 51.7
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 2.3e-07 58.9 39 56.4


User provided reference genes

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