Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 3.3e-211 738.0 351 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 3.6e-24 116.7 410 27.3
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 1.4e-23 114.8 388 28.4
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 4.0e-23 113.2 381 27.3
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 5.2e-23 112.8 400 27.2
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 5.2e-23 112.8 410 27.1
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 2.9e-21 107.1 398 25.9
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 3.7e-21 106.7 402 25.1
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 6.4e-21 105.9 399 28.1
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 6.4e-21 105.9 398 26.4
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 2.4e-20 104.0 393 28.0
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 5.4e-20 102.8 331 30.5
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 9.2e-20 102.1 400 25.5
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 2.7e-19 100.5 389 25.4
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 3.5e-19 100.1 389 25.4
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 3.5e-19 100.1 135 39.3
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 7.8e-19 99.0 112 46.4
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 7.8e-19 99.0 135 40.0
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 1.0e-18 98.6 135 40.0
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 1.0e-18 98.6 399 27.3
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 1.3e-18 98.2 135 40.0
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 2.3e-18 97.4 112 42.9
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 2.9e-18 97.1 134 40.3
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 2.9e-18 97.1 112 42.9
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.9e-18 97.1 135 37.8
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 2.9e-18 97.1 350 28.0
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 2.9e-18 97.1 112 42.9
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 2.9e-18 97.1 249 29.7
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 6.6e-18 95.9 135 39.3
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 6.6e-18 95.9 134 39.6
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 8.6e-18 95.5 135 38.5
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 8.6e-18 95.5 135 37.0
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 8.6e-18 95.5 112 42.9
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 1.1e-17 95.1 145 36.6
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 1.1e-17 95.1 135 37.8
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 1.1e-17 95.1 112 42.0
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 1.5e-17 94.7 112 42.9
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 1.9e-17 94.4 135 35.6
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 1.9e-17 94.4 112 42.0
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 1.9e-17 94.4 135 35.6
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 1.9e-17 94.4 135 37.0
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 2.5e-17 94.0 266 28.9
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 2.5e-17 94.0 112 41.1
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 2.5e-17 94.0 112 41.1
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 2.5e-17 94.0 112 41.1
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 2.5e-17 94.0 112 42.0
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.5e-17 94.0 112 42.9
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 3.3e-17 93.6 135 38.5
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 4.3e-17 93.2 121 42.1
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 4.3e-17 93.2 257 29.6
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 4.3e-17 93.2 112 41.1
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 4.3e-17 93.2 112 41.1
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 4.3e-17 93.2 112 41.1
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 5.6e-17 92.8 112 39.3
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 5.6e-17 92.8 135 36.3
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 5.6e-17 92.8 135 37.8
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 5.6e-17 92.8 112 41.1
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 7.3e-17 92.4 135 34.8
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 7.3e-17 92.4 95 46.3
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 7.3e-17 92.4 113 44.2
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 9.5e-17 92.0 135 34.8
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 9.5e-17 92.0 135 34.8
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 1.2e-16 91.7 135 34.8
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 1.2e-16 91.7 112 42.0
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 1.2e-16 91.7 112 42.0
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 1.2e-16 91.7 135 38.5
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 1.2e-16 91.7 135 34.8
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 1.2e-16 91.7 136 36.8
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 1.2e-16 91.7 113 43.4
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 1.2e-16 91.7 112 40.2
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 1.6e-16 91.3 112 41.1
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 1.6e-16 91.3 112 42.0
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 2.1e-16 90.9 381 25.2
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 2.8e-16 90.5 113 40.7
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 3.6e-16 90.1 135 34.1
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 3.6e-16 90.1 112 38.4
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 3.6e-16 90.1 117 39.3
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 8.0e-16 89.0 135 34.1
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 8.0e-16 89.0 136 39.0
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 1.0e-15 88.6 112 38.4
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 1.0e-15 88.6 135 38.5
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 1.4e-15 88.2 135 34.1
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 1.4e-15 88.2 135 34.1
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 1.4e-15 88.2 135 34.1
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 1.4e-15 88.2 135 35.6
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 1.8e-15 87.8 135 38.5
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 2.3e-15 87.4 113 41.6
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 2.3e-15 87.4 175 32.0
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 3.1e-15 87.0 162 32.7
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 4.0e-15 86.7 112 40.2
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 2.0e-14 84.3 232 29.3
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.0e-14 84.3 118 37.3
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.0e-14 84.3 118 36.4
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.6e-14 84.0 117 37.6
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 4.4e-14 83.2 135 35.6
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 5.8e-14 82.8 135 35.6
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 1.3e-13 81.6 135 35.6
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 2.9e-13 80.5 79 45.6
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 6.4e-13 79.3 144 34.0
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 1.1e-12 78.6 149 37.6
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 1.1e-12 78.6 136 34.6
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 3.2e-12 77.0 152 31.6
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 1.6e-11 74.7 146 32.2
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 1.0e-10 72.0 136 31.6
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 1.3e-10 71.6 75 46.7
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 1.7e-10 71.2 78 38.5
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 1.7e-10 71.2 92 40.2
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.9e-09 67.8 147 29.9
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 4.3e-09 66.6 320 22.8
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 1.2e-06 58.5 59 42.4


User provided reference genes

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