Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 0.0e+00 3016.5 1522 100.0
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.7e-49 203.0 605 29.4
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 1.8e-48 199.5 634 28.4
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 2.4e-48 199.1 509 29.9
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 3.1e-48 198.7 605 28.9
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 3.1e-48 198.7 530 29.6
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 4.1e-48 198.4 718 28.4
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 5.3e-48 198.0 600 28.7
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 7.0e-48 197.6 491 32.4
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 7.0e-48 197.6 491 32.4
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 7.0e-48 197.6 491 32.4
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 7.0e-48 197.6 491 32.4
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 7.0e-48 197.6 607 28.8
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 2.6e-47 195.7 600 29.0
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 3.5e-47 195.3 491 33.0
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 3.5e-47 195.3 600 28.2
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 3.5e-47 195.3 601 30.0
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 3.5e-47 195.3 492 31.1
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 4.5e-47 194.9 491 33.0
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 5.9e-47 194.5 600 29.0
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 7.7e-47 194.1 493 32.7
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 7.7e-47 194.1 491 32.2
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 7.7e-47 194.1 600 28.3
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 1.0e-46 193.7 491 31.2
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.0e-46 193.7 600 28.2
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.3e-46 193.4 491 32.4
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 1.7e-46 193.0 491 31.0
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 1.7e-46 193.0 491 32.8
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 1.7e-46 193.0 631 28.2
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 1.7e-46 193.0 605 28.3
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 2.2e-46 192.6 491 31.0
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 2.9e-46 192.2 524 31.1
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 2.9e-46 192.2 490 32.0
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 3.8e-46 191.8 490 32.7
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 3.8e-46 191.8 490 32.7
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 3.8e-46 191.8 600 28.2
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 3.8e-46 191.8 505 31.1
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 3.8e-46 191.8 491 31.4
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 5.0e-46 191.4 490 32.2
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 5.0e-46 191.4 491 31.8
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 6.5e-46 191.0 490 32.4
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 6.5e-46 191.0 490 32.2
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 6.5e-46 191.0 493 31.4
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 8.5e-46 190.7 491 31.0
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 8.5e-46 190.7 606 29.0
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.1e-45 190.3 490 32.4
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 1.1e-45 190.3 492 30.1
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 1.1e-45 190.3 490 32.4
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 1.9e-45 189.5 604 28.8
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 2.5e-45 189.1 491 30.5
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 2.5e-45 189.1 603 28.5
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 3.2e-45 188.7 492 32.7
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 4.2e-45 188.3 491 31.2
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 4.2e-45 188.3 604 28.8
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 4.2e-45 188.3 605 28.3
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 5.5e-45 188.0 491 31.0
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 5.5e-45 188.0 491 32.2
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 5.5e-45 188.0 491 30.5
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 5.5e-45 188.0 492 31.9
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 5.5e-45 188.0 492 31.1
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 9.4e-45 187.2 530 30.8
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 9.4e-45 187.2 491 32.2
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 1.2e-44 186.8 520 31.0
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 1.6e-44 186.4 492 31.3
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 1.6e-44 186.4 615 28.9
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 2.1e-44 186.0 578 29.1
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 2.1e-44 186.0 605 28.8
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 2.1e-44 186.0 491 30.5
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 2.1e-44 186.0 493 30.0
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 2.1e-44 186.0 491 31.8
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 3.6e-44 185.3 520 29.0
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 3.6e-44 185.3 491 29.9
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 4.7e-44 184.9 492 30.7
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 8.0e-44 184.1 492 30.7
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 8.0e-44 184.1 492 30.9
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 8.0e-44 184.1 607 28.0
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 1.4e-43 183.3 491 30.1
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 2.3e-43 182.6 494 30.2
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 2.3e-43 182.6 491 30.8
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 3.0e-43 182.2 599 27.5
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 5.2e-43 181.4 491 29.9
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 6.7e-43 181.0 495 30.5
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 6.7e-43 181.0 599 27.5
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 8.8e-43 180.6 491 30.8
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 8.8e-43 180.6 492 29.9
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 8.8e-43 180.6 492 29.9
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 2.0e-42 179.5 600 28.2
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 2.6e-42 179.1 493 29.8
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 3.3e-42 178.7 491 29.1
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 4.4e-42 178.3 491 30.8
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 1.3e-41 176.8 600 28.3
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 1.3e-41 176.8 491 31.0
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 1.3e-41 176.8 501 30.5
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 1.3e-41 176.8 607 27.2
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 1.7e-41 176.4 491 30.1
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 2.2e-41 176.0 491 30.8
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 2.2e-41 176.0 496 29.8
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 2.2e-41 176.0 491 30.5
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 2.2e-41 176.0 491 30.3
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 2.8e-41 175.6 599 27.9
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 4.8e-41 174.9 477 30.4
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 4.8e-41 174.9 492 30.1
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 4.8e-41 174.9 491 28.9
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 4.8e-41 174.9 317 35.3
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 6.3e-41 174.5 477 30.4
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 8.2e-41 174.1 415 31.8
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 1.8e-40 172.9 491 30.5
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 5.3e-40 171.4 503 28.8
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 1.6e-39 169.9 486 29.4
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 2.6e-39 169.1 485 30.7
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 4.5e-39 168.3 469 30.5
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 2.9e-38 165.6 494 28.5
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 1.1e-37 163.7 530 28.7
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 9.4e-37 160.6 349 33.8
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 2.1e-36 159.5 564 26.6
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.5e-34 153.3 598 25.8
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 4.4e-34 151.8 365 31.2
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.3e-33 150.2 510 28.0
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.7e-33 149.8 172 45.9
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.8e-33 148.3 286 35.0
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 8.3e-33 147.5 484 28.5
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 1.1e-32 147.1 494 28.3
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 7.7e-31 141.0 547 25.8
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.5e-29 136.7 328 32.3
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 1.9e-29 136.3 287 33.4
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 2.3e-27 129.4 328 30.8
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.4e-26 125.6 332 31.6
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.7e-25 122.1 390 30.5
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.1e-21 110.5 273 31.5
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 4.2e-21 108.6 469 26.2
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 1.6e-20 106.7 266 33.1
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 4.0e-19 102.1 226 33.6
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 6.3e-17 94.7 312 29.2
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 9.2e-16 90.9 241 29.9
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 3.3e-13 82.4 274 27.7
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 5.6e-13 81.6 182 34.6
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 3.6e-12 79.0 190 31.1
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 6.1e-12 78.2 218 31.7
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 5.8e-10 71.6 175 31.4
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 9.8e-10 70.9 188 30.9
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 5.4e-08 65.1 64 50.0
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 4.6e-07 62.0 173 30.6
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 3.0e-06 59.3 66 45.5
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 6.6e-06 58.2 66 45.5


User provided reference genes

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