Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026028 Carpinus fangiana HOM05D004236 ORTHO05D004903 1.8e-262 908.7 445 100.0
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 7.8e-16 89.4 185 34.6
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 7.8e-16 89.4 220 33.2
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 7.8e-16 89.4 200 35.0
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 1.0e-15 89.0 206 34.5
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 1.3e-15 88.6 211 33.2
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 3.0e-15 87.4 211 34.6
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 3.0e-15 87.4 211 34.6
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 3.0e-15 87.4 245 30.6
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 3.0e-15 87.4 253 31.2
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 3.9e-15 87.0 200 33.0
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 3.9e-15 87.0 200 33.0
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 6.6e-15 86.3 263 30.0
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.1e-14 85.5 257 30.0
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 1.1e-14 85.5 257 30.0
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.1e-14 85.5 195 34.9
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 1.1e-14 85.5 220 32.7
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 1.5e-14 85.1 261 29.5
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 1.9e-14 84.7 262 30.9
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 2.5e-14 84.3 276 30.4
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 2.5e-14 84.3 262 30.9
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 2.5e-14 84.3 211 34.6
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 2.5e-14 84.3 198 35.9
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 2.5e-14 84.3 217 34.1
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 2.5e-14 84.3 194 35.1
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 3.3e-14 84.0 198 34.8
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 3.3e-14 84.0 198 34.8
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 3.3e-14 84.0 206 32.5
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 3.3e-14 84.0 261 29.5
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 4.3e-14 83.6 257 31.5
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 4.3e-14 83.6 196 34.7
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 4.3e-14 83.6 254 31.9
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 5.6e-14 83.2 217 32.3
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 5.6e-14 83.2 229 31.9
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 5.6e-14 83.2 180 35.6
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 5.6e-14 83.2 236 30.5
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 7.3e-14 82.8 265 30.6
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 7.3e-14 82.8 276 30.1
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 7.3e-14 82.8 196 33.2
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 7.3e-14 82.8 198 34.3
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 7.3e-14 82.8 241 31.1
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 7.3e-14 82.8 263 29.3
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 9.5e-14 82.4 206 32.0
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 9.5e-14 82.4 266 29.7
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 9.5e-14 82.4 260 29.6
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 1.2e-13 82.0 265 30.2
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 1.2e-13 82.0 189 34.4
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.2e-13 82.0 191 33.5
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 1.2e-13 82.0 205 32.7
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 1.6e-13 81.6 192 33.9
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 1.6e-13 81.6 265 30.2
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.6e-13 81.6 216 31.5
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 1.6e-13 81.6 216 31.5
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 1.6e-13 81.6 196 34.7
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 1.6e-13 81.6 249 31.7
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 1.6e-13 81.6 249 31.7
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 2.1e-13 81.3 196 34.2
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 2.8e-13 80.9 198 33.8
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 2.8e-13 80.9 194 34.5
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.8e-13 80.9 216 31.5
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 2.8e-13 80.9 196 33.2
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 3.6e-13 80.5 275 29.5
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 3.6e-13 80.5 197 34.0
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 3.6e-13 80.5 195 33.8
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 4.7e-13 80.1 209 32.5
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 6.2e-13 79.7 207 31.9
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 6.2e-13 79.7 275 29.8
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 6.2e-13 79.7 216 30.6
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 6.2e-13 79.7 186 33.3
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 6.2e-13 79.7 196 33.7
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 6.2e-13 79.7 197 33.5
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 8.1e-13 79.3 199 33.2
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 8.1e-13 79.3 223 31.8
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 8.1e-13 79.3 201 31.3
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 8.1e-13 79.3 201 31.3
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 8.1e-13 79.3 183 35.5
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 8.1e-13 79.3 208 33.7
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 8.1e-13 79.3 224 31.2
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 1.1e-12 79.0 203 33.5
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 1.1e-12 79.0 269 29.0
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.4e-12 78.6 204 32.4
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 1.4e-12 78.6 196 33.2
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.4e-12 78.6 202 32.2
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 1.4e-12 78.6 202 32.7
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 2.3e-12 77.8 197 32.5
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 2.3e-12 77.8 194 33.5
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 2.3e-12 77.8 260 30.8
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 2.3e-12 77.8 197 34.0
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 2.3e-12 77.8 196 33.2
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 2.3e-12 77.8 206 32.5
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 3.1e-12 77.4 204 30.4
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.1e-12 77.4 211 32.2
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.1e-12 77.4 211 32.2
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 3.1e-12 77.4 211 32.2
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 3.1e-12 77.4 192 33.3
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 4.0e-12 77.0 220 31.4
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 4.0e-12 77.0 191 33.0
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 4.0e-12 77.0 207 31.4
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 5.2e-12 76.6 206 33.5
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 5.2e-12 76.6 191 32.5
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 5.2e-12 76.6 194 33.5
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 6.8e-12 76.3 144 36.8
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 6.8e-12 76.3 196 34.7
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 8.9e-12 75.9 194 32.0
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 8.9e-12 75.9 196 32.7
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 1.2e-11 75.5 196 32.1
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 1.2e-11 75.5 226 29.2
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.5e-11 75.1 199 31.7
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.5e-11 75.1 194 32.0
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.5e-11 75.1 209 32.1
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 1.5e-11 75.1 197 31.5
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.0e-11 74.7 191 33.0
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 2.2e-10 71.2 149 33.6
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 2.2e-10 71.2 305 26.6
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 1.1e-09 68.9 297 25.9
HPP92_023113 Vanilla planifolia HOM05D004236 ORTHO05D004903 2.4e-09 67.8 163 32.5
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 3.2e-09 67.4 140 35.0
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 9.2e-09 65.9 134 36.6
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 1.6e-08 65.1 174 32.2
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 3.5e-08 63.9 136 33.1
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 7.8e-08 62.8 228 28.9
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 1.3e-07 62.0 140 32.1
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 1.7e-07 61.6 243 27.2
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.7e-07 61.6 215 27.4
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 8.6e-07 59.3 170 31.8
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 3.3e-06 57.4 137 35.8
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.3e-06 57.0 188 30.9
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 9.6e-06 55.8 133 34.6


User provided reference genes

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