Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 0.0e+00 3332.7 1721 100.0
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 6.9e-20 104.8 201 35.8
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 9.1e-20 104.4 220 32.7
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 7.7e-19 101.3 187 35.8
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 2.2e-18 99.8 235 32.8
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 2.9e-18 99.4 195 35.4
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 3.8e-18 99.0 196 33.7
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 5.0e-18 98.6 195 35.4
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 6.5e-18 98.2 206 34.5
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 6.5e-18 98.2 206 34.5
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 8.5e-18 97.8 207 32.4
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 1.1e-17 97.4 205 33.7
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 1.4e-17 97.1 200 33.5
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.9e-17 96.7 205 32.7
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 1.9e-17 96.7 204 33.3
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 2.5e-17 96.3 199 34.7
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 3.2e-17 95.9 193 34.2
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 3.2e-17 95.9 195 33.3
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 4.2e-17 95.5 198 32.8
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 4.2e-17 95.5 202 34.2
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 5.5e-17 95.1 188 34.0
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 5.5e-17 95.1 180 35.0
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 7.2e-17 94.7 132 40.2
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 7.2e-17 94.7 191 33.0
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 7.2e-17 94.7 191 33.0
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 7.2e-17 94.7 205 33.2
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 9.4e-17 94.4 181 34.8
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 9.4e-17 94.4 200 33.5
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 9.4e-17 94.4 156 36.5
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 1.6e-16 93.6 217 32.3
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 1.6e-16 93.6 203 34.5
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 2.1e-16 93.2 195 32.3
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 2.1e-16 93.2 210 31.4
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 2.7e-16 92.8 196 33.2
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 2.7e-16 92.8 151 36.4
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 2.7e-16 92.8 200 34.0
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 2.7e-16 92.8 174 35.6
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 3.6e-16 92.4 200 34.5
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 3.6e-16 92.4 247 30.8
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 6.1e-16 91.7 196 32.1
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 6.1e-16 91.7 189 33.9
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 7.9e-16 91.3 137 38.7
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 7.9e-16 91.3 175 33.7
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 1.0e-15 90.9 131 40.5
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 1.0e-15 90.9 139 38.1
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 1.4e-15 90.5 187 31.6
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 1.4e-15 90.5 153 35.9
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 1.8e-15 90.1 193 33.2
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 1.8e-15 90.1 131 39.7
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 2.3e-15 89.7 122 42.6
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 2.3e-15 89.7 137 38.0
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 3.0e-15 89.4 132 39.4
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 3.9e-15 89.0 184 35.9
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 3.9e-15 89.0 197 32.5
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 3.9e-15 89.0 132 39.4
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 8.8e-15 87.8 149 35.6
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 1.1e-14 87.4 137 38.7
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 1.5e-14 87.0 206 32.0
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 1.5e-14 87.0 137 36.5
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 1.5e-14 87.0 137 36.5
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 1.5e-14 87.0 209 30.6
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 2.0e-14 86.7 132 36.4
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 2.6e-14 86.3 203 31.5
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 3.3e-14 85.9 132 39.4
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 3.3e-14 85.9 132 37.9
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 3.3e-14 85.9 134 37.3
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 4.4e-14 85.5 188 31.4
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 4.4e-14 85.5 137 36.5
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 4.4e-14 85.5 118 39.8
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 7.4e-14 84.7 218 32.6
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 7.4e-14 84.7 147 36.1
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 7.4e-14 84.7 133 41.4
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 9.7e-14 84.3 137 36.5
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 9.7e-14 84.3 137 36.5
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 9.7e-14 84.3 217 29.5
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 1.3e-13 84.0 150 36.0
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 1.7e-13 83.6 155 36.8
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 2.2e-13 83.2 183 33.3
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 2.8e-13 82.8 164 34.8
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 3.7e-13 82.4 145 35.2
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 4.8e-13 82.0 137 36.5
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 6.3e-13 81.6 132 37.9
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 6.3e-13 81.6 185 31.4
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 8.2e-13 81.3 137 36.5
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.1e-12 80.9 118 38.1
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 1.1e-12 80.9 118 39.8
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 1.4e-12 80.5 119 38.7
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 5.3e-12 78.6 140 35.7
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 7.7e-11 74.7 131 37.4
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 1.0e-10 74.3 136 35.3
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 1.7e-10 73.6 186 31.2
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 2.9e-10 72.8 158 32.3
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 4.2e-09 68.9 137 36.5
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 7.2e-09 68.2 131 33.6
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.0e-07 64.3 66 48.5
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-07 63.9 112 38.4
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.4e-07 63.9 66 48.5
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.1e-06 60.8 40 65.0
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 1.5e-06 60.5 54 51.9
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 2.0e-06 60.1 47 57.4
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 3.3e-06 59.3 40 62.5
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 5.7e-06 58.5 214 24.8


User provided reference genes

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