Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025964 Carpinus fangiana HOM05D001078 ORTHO05D006799 0.0e+00 1474.1 847 100.0
PRCOL_00000281 Prasinoderma coloniale HOM05D001312 ORTHO05D001832 3.4e-12 78.2 345 30.1
Lj6g0014414 Lotus japonicus HOM05D001078 ORTHO05D000927 3.0e-08 65.1 85 36.5
CDE08G1500 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 3.9e-08 64.7 78 39.7
CBR_g37121 Chara braunii HOM05D001078 ORTHO05D000927 3.9e-08 64.7 111 36.0
HPP92_014180 Vanilla planifolia HOM05D001078 ORTHO05D000927 6.7e-08 63.9 129 31.0
Zm00001eb104280 Zea mays HOM05D001078 ORTHO05D000927 8.7e-08 63.5 89 33.7
Hund23234 Selenicereus undatus HOM05D001078 ORTHO05D000927 1.1e-07 63.2 85 32.9
Zm00001eb320910 Zea mays HOM05D001078 ORTHO05D000927 1.5e-07 62.8 89 33.7
COL.COLO4_09674 Corchorus olitorius HOM05D001078 ORTHO05D000927 1.9e-07 62.4 85 34.1
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 1.9e-07 62.4 83 36.1
Duzib235G1112 Durio zibethinus HOM05D000336 ORTHO05D000593 1.9e-07 62.4 90 36.7
ECA246G0232 Erigeron canadensis HOM05D001078 ORTHO05D000927 1.9e-07 62.4 81 40.7
HanXRQChr05g0159511 Helianthus annuus HOM05D001078 ORTHO05D000927 1.9e-07 62.4 84 36.9
MSTRG.14439 Avicennia marina HOM05D001078 ORTHO05D000927 2.5e-07 62.0 81 33.3
MBI18_g06103_MAGBIO Magnolia biondii HOM05D001078 ORTHO05D000927 2.5e-07 62.0 85 32.9
Ah.04g165980 Amaranthus hybridus HOM05D001078 ORTHO05D000927 3.3e-07 61.6 76 35.5
CARHR075160 Cardamine hirsuta HOM05D000336 ORTHO05D002301 3.3e-07 61.6 128 30.5
CiPaw.12G131000 Carya illinoinensis HOM05D001078 ORTHO05D000927 3.3e-07 61.6 85 34.1
AUR62020421 Chenopodium quinoa HOM05D001078 ORTHO05D000927 3.3e-07 61.6 85 31.8
Gohir.A04G014100 Gossypium hirsutum HOM05D001078 ORTHO05D000927 3.3e-07 61.6 85 34.1
Lalb_Chr17g0348511 Lupinus albus HOM05D001078 ORTHO05D000927 3.3e-07 61.6 85 34.1
Nn1g03501 Nelumbo nucifera HOM05D001078 ORTHO05D000927 3.3e-07 61.6 85 35.3
Os09g0550000 Oryza sativa ssp. japonica HOM05D001078 ORTHO05D000927 3.3e-07 61.6 89 32.6
Sc16g0005940 Simmondsia chinensis HOM05D001078 ORTHO05D000927 3.3e-07 61.6 85 34.1
SGA_v2.0_scaffold8G04327 Striga asiatica HOM05D001078 ORTHO05D000927 3.3e-07 61.6 81 32.1
AUR62015795 Chenopodium quinoa HOM05D001078 ORTHO05D000927 4.3e-07 61.2 85 31.8
Duzib213G0265 Durio zibethinus HOM05D001078 ORTHO05D000927 4.3e-07 61.2 85 34.1
MD09G1016100 Malus domestica HOM05D000336 ORTHO05D002301 4.3e-07 61.2 88 37.5
Nn1g07159 Nelumbo nucifera HOM05D001078 ORTHO05D000927 4.3e-07 61.2 86 33.7
Aa31LG3G10930 Aethionema arabicum HOM05D001078 ORTHO05D000927 5.7e-07 60.8 81 35.8
MSTRG.12982 Avicennia marina HOM05D001078 ORTHO05D000927 5.7e-07 60.8 81 32.1
EL10Ac4g07787 Beta vulgaris HOM05D001078 ORTHO05D000927 5.7e-07 60.8 85 32.9
Gohir.A10G032300 Gossypium hirsutum HOM05D000336 ORTHO05D000593 5.7e-07 60.8 73 38.4
Gohir.D05G154300 Gossypium hirsutum HOM05D000336 ORTHO05D000593 5.7e-07 60.8 90 36.7
Gorai.009G158600 Gossypium raimondii HOM05D000336 ORTHO05D000593 5.7e-07 60.8 90 36.7
Gorai.011G034900 Gossypium raimondii HOM05D000336 ORTHO05D000593 5.7e-07 60.8 73 38.4
Lsat_1_v5_gn_5_3721 Lactuca sativa HOM05D001078 ORTHO05D000927 5.7e-07 60.8 88 36.4
Pp3c5_1040 Physcomitrium patens HOM05D001078 ORTHO05D000927 5.7e-07 60.8 87 39.1
PGR083G1710 Punica granatum HOM05D001078 ORTHO05D000927 5.7e-07 60.8 85 35.3
AagrBONN_evm.TU.Sc2ySwM_362.693 Anthoceros agrestis HOM05D001078 ORTHO05D000927 7.4e-07 60.5 86 37.2
CiPaw.11G191200 Carya illinoinensis HOM05D001078 ORTHO05D000927 7.4e-07 60.5 85 32.9
Lj2g0019889 Lotus japonicus HOM05D001937 ORTHO05D003828 7.4e-07 60.5 79 34.2
QL05p052872 Quercus lobata HOM05D000336 ORTHO05D000593 7.4e-07 60.5 73 38.4
Thecc.04G168700 Theobroma cacao HOM05D001937 ORTHO05D003828 7.4e-07 60.5 79 39.2
HPP92_002699 Vanilla planifolia HOM05D000336 ORTHO05D002301 7.4e-07 60.5 100 33.0
GSVIVG01037669001 Vitis vinifera HOM05D001078 ORTHO05D000927 7.4e-07 60.5 81 34.6
CSS0032005 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 9.6e-07 60.1 79 38.0
CSS0037154 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 9.6e-07 60.1 79 38.0
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 9.6e-07 60.1 79 35.4
ClCG02G003450 Citrullus lanatus HOM05D001078 ORTHO05D000927 9.6e-07 60.1 85 30.6
MELO3C013253.2 Cucumis melo HOM05D001078 ORTHO05D000927 9.6e-07 60.1 85 30.6
CsaV3_7G001860 Cucumis sativus L. HOM05D001078 ORTHO05D000927 9.6e-07 60.1 85 30.6
Duzib160G0793 Durio zibethinus HOM05D000336 ORTHO05D000593 9.6e-07 60.1 90 35.6
PGR083G1853 Punica granatum HOM05D000336 ORTHO05D002301 9.6e-07 60.1 102 33.3
Rhsim06G0218500 Rhododendron simsii HOM05D001078 ORTHO05D000927 9.6e-07 60.1 81 33.3
TPR.G1103 Trifolium pratense HOM05D000336 ORTHO05D002301 9.6e-07 60.1 90 35.6
HPP92_014559 Vanilla planifolia HOM05D001078 ORTHO05D000927 9.6e-07 60.1 105 28.6
AT1G20670 Arabidopsis thaliana HOM05D001078 ORTHO05D000927 1.3e-06 59.7 89 31.5
DCAR_016713 Daucus carota HOM05D001078 ORTHO05D000927 1.3e-06 59.7 81 32.1
Gohir.D05G182100 Gossypium hirsutum HOM05D001078 ORTHO05D000927 1.3e-06 59.7 89 30.3
Gohir.D05G372200 Gossypium hirsutum HOM05D001078 ORTHO05D000927 1.3e-06 59.7 85 32.9
Gorai.009G440400 Gossypium raimondii HOM05D001078 ORTHO05D000927 1.3e-06 59.7 85 32.9
Mapoly0004s0082 Marchantia polymorpha HOM05D001078 ORTHO05D000927 1.3e-06 59.7 75 41.3
Nn1g09835 Nelumbo nucifera HOM05D001937 ORTHO05D003828 1.3e-06 59.7 78 38.5
QL08p009613 Quercus lobata HOM05D001078 ORTHO05D000927 1.3e-06 59.7 85 32.9
SGA_v2.0_scaffold43G16258 Striga asiatica HOM05D001078 ORTHO05D000927 1.3e-06 59.7 81 32.1
Zm00001eb105830 Zea mays HOM05D001078 ORTHO05D000927 1.3e-06 59.7 137 25.5
Actinidia05089 Actinidia chinensis HOM05D001078 ORTHO05D000927 1.6e-06 59.3 89 33.7
Actinidia35357 Actinidia chinensis HOM05D001078 ORTHO05D000927 1.6e-06 59.3 85 32.9
COL.COLO4_34299 Corchorus olitorius HOM05D001078 ORTHO05D000927 1.6e-06 59.3 89 30.3
Dinv24157 Davidia involucrata HOM05D001937 ORTHO05D003828 1.6e-06 59.3 79 38.0
Eucgr.F03569 Eucalyptus grandis HOM05D001078 ORTHO05D000927 1.6e-06 59.3 85 30.6
Gohir.A05G151900 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.6e-06 59.3 90 36.7
Gohir.D10G033100 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.6e-06 59.3 73 37.0
LjContig00272g0005281 Lotus japonicus HOM05D001078 ORTHO05D000927 1.6e-06 59.3 85 32.9
Phvul.008G268700 Phaseolus vulgaris HOM05D001078 ORTHO05D000927 1.6e-06 59.3 85 32.9
Sabra02G0006700 Salix brachista HOM05D001078 ORTHO05D000927 1.6e-06 59.3 89 28.1
Hund02419 Selenicereus undatus HOM05D000336 ORTHO05D002301 1.6e-06 59.3 102 32.4
vmacro02227 Vaccinium macrocarpon HOM05D001078 ORTHO05D000927 1.6e-06 59.3 81 32.1
Actinidia24794 Actinidia chinensis HOM05D001078 ORTHO05D000927 2.1e-06 58.9 110 31.8
Ah.01g010000 Amaranthus hybridus HOM05D001078 ORTHO05D000927 2.1e-06 58.9 89 31.5
CSS0014275 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 2.1e-06 58.9 95 36.8
Cfa020326 Carpinus fangiana HOM05D001078 ORTHO05D000927 2.1e-06 58.9 85 32.9
MELO3C021095.2 Cucumis melo HOM05D001937 ORTHO05D003828 2.1e-06 58.9 79 38.0
CsaV3_7G026510 Cucumis sativus L. HOM05D001937 ORTHO05D003828 2.1e-06 58.9 79 38.0
DCAR_007474 Daucus carota HOM05D000336 ORTHO05D002301 2.1e-06 58.9 150 28.7
DCAR_015399 Daucus carota HOM05D000336 ORTHO05D000593 2.1e-06 58.9 80 36.2
Eucgr.F00750 Eucalyptus grandis HOM05D001078 ORTHO05D000927 2.1e-06 58.9 116 29.3
FvH4_5g25400 Fragaria vesca HOM05D001078 ORTHO05D000927 2.1e-06 58.9 89 28.1
MD06G1010000 Malus domestica HOM05D001078 ORTHO05D000927 2.1e-06 58.9 89 29.2
Manes.07G036600 Manihot esculenta HOM05D001937 ORTHO05D003828 2.1e-06 58.9 79 40.5
Manes.15G116300 Manihot esculenta HOM05D000336 ORTHO05D000593 2.1e-06 58.9 71 38.0
MCO07G152 Micromonas commoda HOM05D005044 ORTHO05D006799 2.1e-06 58.9 83 33.7
RhsimUnG0249300 Rhododendron simsii HOM05D001078 ORTHO05D000927 2.1e-06 58.9 92 33.7
Sed0021197 Sechium edule HOM05D001078 ORTHO05D000927 2.1e-06 58.9 94 37.2
TAR628G1074 Trochodendron aralioides HOM05D001078 ORTHO05D000927 2.1e-06 58.9 89 29.2
Aqoxy4G02410 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 2.8e-06 58.5 79 39.2
CSS0008730 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 2.8e-06 58.5 77 40.3
CSS0033954 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 2.8e-06 58.5 77 40.3
CiPaw.05G030600 Carya illinoinensis HOM05D001937 ORTHO05D003828 2.8e-06 58.5 79 38.0
ClCG09G008530 Citrullus lanatus HOM05D001937 ORTHO05D003828 2.8e-06 58.5 79 38.0
CsaV3_7G021900 Cucumis sativus L. HOM05D001078 ORTHO05D000927 2.8e-06 58.5 94 31.9
FAN13G2693 Fragaria x ananassa HOM05D001078 ORTHO05D000927 2.8e-06 58.5 89 28.1
Manes.06G116700 Manihot esculenta HOM05D000336 ORTHO05D002301 2.8e-06 58.5 90 32.2
RcHm_v2.0_Chr7g0215631 Rosa chinensis HOM05D001078 ORTHO05D000927 2.8e-06 58.5 89 28.1
Sabra17G0032100 Salix brachista HOM05D001937 ORTHO05D003828 2.8e-06 58.5 79 39.2
GSVIVG01020528001 Vitis vinifera HOM05D001937 ORTHO05D003828 2.8e-06 58.5 79 36.7
Zm00001eb200990 Zea mays HOM05D000336 ORTHO05D000593 2.8e-06 58.5 59 44.1
Cfa010551 Carpinus fangiana HOM05D000336 ORTHO05D000593 3.7e-06 58.2 144 35.4
CDE05G1366 Ceratophyllum demersum HOM05D001078 ORTHO05D000927 3.7e-06 58.2 99 32.3
FAN08G2729 Fragaria x ananassa HOM05D001078 ORTHO05D000927 3.7e-06 58.2 89 28.1
Gohir.D02G100800 Gossypium hirsutum HOM05D001078 ORTHO05D000927 3.7e-06 58.2 89 28.1
Lj2C174G11 Lonicera japonica HOM05D001937 ORTHO05D003828 3.7e-06 58.2 79 36.7
MD05G1135100 Malus domestica HOM05D001078 ORTHO05D000927 3.7e-06 58.2 89 30.3
Manes.11G110400 Manihot esculenta HOM05D001078 ORTHO05D000927 3.7e-06 58.2 89 28.1
Nitab4.5_0006073g0010 Nicotiana tabacum HOM05D000336 ORTHO05D002301 3.7e-06 58.2 90 35.6
PSO541G1235 Papaver somniferum HOM05D001078 ORTHO05D000927 3.7e-06 58.2 89 28.1
PSO675G8452 Papaver somniferum HOM05D001078 ORTHO05D000927 3.7e-06 58.2 89 28.1
PGR031G3838 Punica granatum HOM05D001078 ORTHO05D000927 3.7e-06 58.2 89 28.1
PGR142G3568 Punica granatum HOM05D001078 ORTHO05D000927 3.7e-06 58.2 89 29.2
Hund00077 Selenicereus undatus HOM05D001078 ORTHO05D000927 3.7e-06 58.2 89 31.5
TWI56G0470 Tripterygium wilfordii HOM05D001078 ORTHO05D000927 3.7e-06 58.2 89 29.2
Actinidia28033 Actinidia chinensis HOM05D001937 ORTHO05D003828 4.8e-06 57.8 79 36.7
ATR1120G087 Amborella trichopoda HOM05D001937 ORTHO05D003828 4.8e-06 57.8 78 38.5
arahy.Tifrunner.gnm1.ann1.R0BHUP Arachis hypogaea HOM05D001078 ORTHO05D000927 4.8e-06 57.8 94 37.2
arahy.Tifrunner.gnm1.ann1.Z8B0E4 Arachis hypogaea HOM05D001078 ORTHO05D000927 4.8e-06 57.8 94 37.2
CSS0025389 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 4.8e-06 57.8 74 40.5
CSS0029179 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 4.8e-06 57.8 74 40.5
Ca_06328_v3 Cicer arietinum L. HOM05D001078 ORTHO05D000927 4.8e-06 57.8 85 31.8
Ca_30699_v3 Cicer arietinum L. HOM05D001078 ORTHO05D000927 4.8e-06 57.8 85 31.8
Dinv22255 Davidia involucrata HOM05D001078 ORTHO05D000927 4.8e-06 57.8 81 33.3
Dinv40767 Davidia involucrata HOM05D001078 ORTHO05D000927 4.8e-06 57.8 81 30.9
Gohir.A05G178600 Gossypium hirsutum HOM05D001078 ORTHO05D000927 4.8e-06 57.8 89 29.2
Gorai.012G012700 Gossypium raimondii HOM05D001078 ORTHO05D000927 4.8e-06 57.8 85 32.9
Hma1.2p1_0012F.1_g007690 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 4.8e-06 57.8 90 34.4
Lsat_1_v5_gn_2_93741 Lactuca sativa HOM05D000336 ORTHO05D002301 4.8e-06 57.8 71 35.2
MBI05_g09440_MAGBIO Magnolia biondii HOM05D001078 ORTHO05D000927 4.8e-06 57.8 85 30.6
Manes.03G131100 Manihot esculenta HOM05D001078 ORTHO05D000927 4.8e-06 57.8 85 31.8
RcHm_v2.0_Chr5g0040321 Rosa chinensis HOM05D001078 ORTHO05D000927 4.8e-06 57.8 85 31.8
SHI26593 Sapria himalayana HOM05D001078 ORTHO05D000927 4.8e-06 57.8 76 36.8
SEGI_24250 Sequoiadendron giganteum HOM05D001078 ORTHO05D000927 4.8e-06 57.8 85 34.1
Sc25g0001620 Simmondsia chinensis HOM05D001937 ORTHO05D003828 4.8e-06 57.8 79 36.7
THA.LOC104809829 Tarenaya hassleriana HOM05D001078 ORTHO05D000927 4.8e-06 57.8 85 32.9
THA.LOC104811614 Tarenaya hassleriana HOM05D001078 ORTHO05D000927 4.8e-06 57.8 81 32.1
TWI31G0667 Tripterygium wilfordii HOM05D001078 ORTHO05D000927 4.8e-06 57.8 85 32.9
TWI36G0672 Tripterygium wilfordii HOM05D001078 ORTHO05D000927 4.8e-06 57.8 89 29.2
Aqoxy5G01017 Aquilegia oxysepala HOM05D001078 ORTHO05D000927 6.3e-06 57.4 85 27.1
arahy.Tifrunner.gnm1.ann1.73019P Arachis hypogaea HOM05D000336 ORTHO05D000593 6.3e-06 57.4 71 36.6
arahy.Tifrunner.gnm1.ann1.973ZBX Arachis hypogaea HOM05D000336 ORTHO05D000593 6.3e-06 57.4 71 36.6
CSS0023926 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 6.3e-06 57.4 95 35.8
CANSAT11G0386 Cannabis sativa HOM05D001078 ORTHO05D000927 6.3e-06 57.4 85 32.9
AUR62013169 Chenopodium quinoa HOM05D001078 ORTHO05D000927 6.3e-06 57.4 85 32.9
Ca_25089_v3 Cicer arietinum L. HOM05D001937 ORTHO05D003828 6.3e-06 57.4 79 34.2
DCAR_013143 Daucus carota HOM05D000336 ORTHO05D000593 6.3e-06 57.4 88 34.1
Duzib084G0728 Durio zibethinus HOM05D000336 ORTHO05D002301 6.3e-06 57.4 102 30.4
Migut.H01816 Erythranthe guttata HOM05D001078 ORTHO05D000927 6.3e-06 57.4 137 28.5
Glyma.13G066200 Glycine max HOM05D001078 ORTHO05D000927 6.3e-06 57.4 85 32.9
MD16G1284400 Malus domestica HOM05D001078 ORTHO05D000927 6.3e-06 57.4 89 29.2
Medtr3g115560 Medicago truncatula HOM05D001078 ORTHO05D000927 6.3e-06 57.4 89 28.1
Potri.001G335000 Populus trichocarpa HOM05D000336 ORTHO05D002301 6.3e-06 57.4 74 40.5
Prupe.4G215800 Prunus persica HOM05D001078 ORTHO05D000927 6.3e-06 57.4 85 31.8
Sabra16G0216100 Salix brachista HOM05D000336 ORTHO05D002301 6.3e-06 57.4 88 36.4
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 6.3e-06 57.4 91 31.9
Sed0008760 Sechium edule HOM05D001078 ORTHO05D000927 6.3e-06 57.4 89 28.1
Hund17848 Selenicereus undatus HOM05D000336 ORTHO05D000593 6.3e-06 57.4 62 45.2
Zm00001eb091620 Zea mays HOM05D000336 ORTHO05D000593 6.3e-06 57.4 59 44.1
Zm00001eb322530 Zea mays HOM05D001078 ORTHO05D000927 6.3e-06 57.4 137 24.8
Atru.chr9.1024 Acer truncatum HOM05D000336 ORTHO05D002301 8.2e-06 57.0 85 30.6
AT5G55040 Arabidopsis thaliana HOM05D001078 ORTHO05D000927 8.2e-06 57.0 80 35.0
Cpa.g.sc177.20 Carica papaya HOM05D001937 ORTHO05D003828 8.2e-06 57.0 79 38.0
CiPaw.05G092400 Carya illinoinensis HOM05D001078 ORTHO05D000927 8.2e-06 57.0 89 29.2
Ca_15412_v3 Cicer arietinum L. HOM05D001078 ORTHO05D000927 8.2e-06 57.0 89 30.3
Gohir.A02G085100 Gossypium hirsutum HOM05D001078 ORTHO05D000927 8.2e-06 57.0 89 28.1
Gohir.A05G404950 Gossypium hirsutum HOM05D019731 ORTHO05D018918 8.2e-06 57.0 85 32.9
Gohir.D05G181900 Gossypium hirsutum HOM05D001078 ORTHO05D000927 8.2e-06 57.0 85 29.4
Medtr3g052530 Medicago truncatula HOM05D001078 ORTHO05D000927 8.2e-06 57.0 85 32.9
Nitab4.5_0002287g0090 Nicotiana tabacum HOM05D001078 ORTHO05D000927 8.2e-06 57.0 81 32.1
Psat2g011520 Pisum sativum HOM05D001078 ORTHO05D000927 8.2e-06 57.0 85 31.8
Psat5g176480 Pisum sativum HOM05D001078 ORTHO05D000927 8.2e-06 57.0 81 33.3
Sabra05G0195600 Salix brachista HOM05D001078 ORTHO05D000927 8.2e-06 57.0 89 28.1
TPR.G1187 Trifolium pratense HOM05D001078 ORTHO05D000927 8.2e-06 57.0 85 31.8
TPR.G33790 Trifolium pratense HOM05D001078 ORTHO05D000927 8.2e-06 57.0 85 31.8


User provided reference genes

Program Settings