Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025946 Carpinus fangiana HOM05D002510 ORTHO05D123128 0.0e+00 3209.9 1743 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3754 Anthoceros agrestis HOM05D002510 ORTHO05D007210 2.5e-25 122.9 300 31.3
TPR.G1937 Trifolium pratense HOM05D002510 ORTHO05D007210 2.1e-24 119.8 355 24.5
Medtr1g095040 Medicago truncatula HOM05D002510 ORTHO05D007210 4.7e-24 118.6 348 25.6
Phvul.007G094700 Phaseolus vulgaris HOM05D002510 ORTHO05D007210 6.1e-24 118.2 376 26.6
AUR62033005 Chenopodium quinoa HOM05D002510 ORTHO05D007210 1.8e-23 116.7 358 26.5
THA.LOC104827301 Tarenaya hassleriana HOM05D002510 ORTHO05D007210 1.8e-23 116.7 386 24.6
C01p27080 Brassica napus HOM05D002510 ORTHO05D007210 2.3e-23 116.3 382 26.2
Carub.0006s1900 Capsella rubella HOM05D002510 ORTHO05D007210 2.3e-23 116.3 459 24.4
BolC1t02655H Brassica oleracea HOM05D002510 ORTHO05D007210 3.0e-23 115.9 382 26.2
AT5G20660 Arabidopsis thaliana HOM05D002510 ORTHO05D007210 1.2e-22 114.0 376 25.5
Lj1C913G7 Lonicera japonica HOM05D002510 ORTHO05D007210 2.0e-22 113.2 382 24.9
SMO364G0963 Selaginella moellendorffii HOM05D002510 ORTHO05D007210 2.0e-22 113.2 210 31.9
HPP92_008761 Vanilla planifolia HOM05D002510 ORTHO05D007210 2.0e-22 113.2 244 31.6
A01p21720 Brassica napus HOM05D002510 ORTHO05D007210 2.6e-22 112.8 377 24.7
BraA01t02081Z Brassica rapa HOM05D002510 ORTHO05D007210 2.6e-22 112.8 377 24.7
Ciclev10030651m.g Citrus clementina HOM05D002510 ORTHO05D007210 2.6e-22 112.8 396 25.5
ECA233G4317 Erigeron canadensis HOM05D002510 ORTHO05D007210 2.6e-22 112.8 378 25.1
Psat6g183520 Pisum sativum HOM05D002510 ORTHO05D007210 2.6e-22 112.8 215 30.2
ATR0048G055 Amborella trichopoda HOM05D002510 ORTHO05D007210 4.4e-22 112.1 418 23.7
CARHR290280 Cardamine hirsuta HOM05D002510 ORTHO05D007210 4.4e-22 112.1 383 24.8
Potri.008G039400 Populus trichocarpa HOM05D002510 ORTHO05D007210 4.4e-22 112.1 374 25.4
unitig_26.g9080 Utricularia gibba HOM05D002510 ORTHO05D007210 4.4e-22 112.1 238 33.2
AL6G32210 Arabidopsis lyrata HOM05D002510 ORTHO05D007210 5.7e-22 111.7 214 31.3
HanXRQChr08g0218901 Helianthus annuus HOM05D002510 ORTHO05D007210 5.7e-22 111.7 385 24.9
TWI15G1196 Tripterygium wilfordii HOM05D002510 ORTHO05D007210 7.5e-22 111.3 218 30.3
AUR62038657 Chenopodium quinoa HOM05D002510 ORTHO05D007210 9.8e-22 110.9 214 31.3
Oeu014387.1 Olea europaea HOM05D002510 ORTHO05D007210 9.8e-22 110.9 210 31.4
Peaxi162Scf01719g00012 Petunia axillaris HOM05D002510 ORTHO05D007210 9.8e-22 110.9 374 25.4
Cc02_g11330 Coffea canephora HOM05D002510 ORTHO05D007210 1.3e-21 110.5 215 30.7
Manes.10G046400 Manihot esculenta HOM05D002510 ORTHO05D007210 1.3e-21 110.5 356 26.7
Glyma.10G210900 Glycine max HOM05D002510 ORTHO05D007210 1.7e-21 110.2 214 29.9
Ah.08g213550 Amaranthus hybridus HOM05D002510 ORTHO05D007210 2.2e-21 109.8 360 25.0
Manes.10G046500 Manihot esculenta HOM05D002510 ORTHO05D007210 2.2e-21 109.8 248 30.2
Solyc04g025260.3 Solanum lycopersicum HOM05D002510 ORTHO05D007210 2.2e-21 109.8 222 32.0
TAR633G1832 Trochodendron aralioides HOM05D002510 ORTHO05D007210 2.2e-21 109.8 379 24.8
MSTRG.8144 Avicennia marina HOM05D002510 ORTHO05D007210 2.9e-21 109.4 218 30.3
ClCG05G021040 Citrullus lanatus HOM05D002510 ORTHO05D007210 2.9e-21 109.4 213 31.5
Sp7g14310 Schrenkiella parvula HOM05D002510 ORTHO05D007210 3.7e-21 109.0 378 25.1
VMungo0720G2840 Vigna mungo HOM05D002510 ORTHO05D007210 3.7e-21 109.0 215 30.7
Dinv36438 Davidia involucrata HOM05D002510 ORTHO05D007210 4.9e-21 108.6 440 23.9
SalBow3G0762 Salvia bowleyana HOM05D002510 ORTHO05D007210 4.9e-21 108.6 220 30.0
Sopen04g011710 Solanum pennellii HOM05D002510 ORTHO05D007210 4.9e-21 108.6 222 32.0
MD07G1174500 Malus domestica HOM05D002510 ORTHO05D007210 6.4e-21 108.2 216 29.6
BcaNung00246 Brassica carinata HOM05D002510 ORTHO05D007210 8.3e-21 107.8 174 32.8
Eucgr.G02835 Eucalyptus grandis HOM05D002510 ORTHO05D007210 8.3e-21 107.8 398 26.4
GSVIVG01016269001 Vitis vinifera HOM05D002510 ORTHO05D007210 8.3e-21 107.8 217 31.8
CAN.G656.24 Capsicum annuum HOM05D002510 ORTHO05D007210 1.1e-20 107.5 351 26.8
Thhalv10024352m.g Eutrema salsugineum HOM05D002510 ORTHO05D007210 1.1e-20 107.5 389 24.7
Sed0025740 Sechium edule HOM05D002510 ORTHO05D007210 1.1e-20 107.5 215 29.3
Hund12052 Selenicereus undatus HOM05D002510 ORTHO05D007210 1.1e-20 107.5 215 29.8
MELO3C012427.2 Cucumis melo HOM05D002510 ORTHO05D007210 1.4e-20 107.1 215 30.2
CsaV3_5G036260 Cucumis sativus L. HOM05D002510 ORTHO05D007210 1.4e-20 107.1 214 30.8
Hma1.2p1_0039F.1_g024760 Hydrangea macrophylla HOM05D002510 ORTHO05D007210 1.4e-20 107.1 215 30.2
Lsat_1_v5_gn_8_20140 Lactuca sativa HOM05D002510 ORTHO05D007210 1.4e-20 107.1 215 31.2
Lalb_Chr21g0306101 Lupinus albus HOM05D002510 ORTHO05D007210 1.4e-20 107.1 174 32.8
Atru.chr12.757 Acer truncatum HOM05D002510 ORTHO05D007210 2.4e-20 106.3 308 26.6
arahy.Tifrunner.gnm1.ann1.T8Z27G Arachis hypogaea HOM05D002510 ORTHO05D007210 2.4e-20 106.3 218 28.9
Sc09g0006280 Simmondsia chinensis HOM05D002510 ORTHO05D007210 2.4e-20 106.3 252 28.2
Atru.chr12.781 Acer truncatum HOM05D002510 ORTHO05D007210 3.2e-20 105.9 349 25.5
arahy.Tifrunner.gnm1.ann1.UF4UZA Arachis hypogaea HOM05D002510 ORTHO05D007210 3.2e-20 105.9 215 28.8
Migut.F01756 Erythranthe guttata HOM05D002510 ORTHO05D007210 3.2e-20 105.9 216 30.1
Lj5g0022157 Lotus japonicus HOM05D002510 ORTHO05D007210 3.2e-20 105.9 214 29.0
Nn2g10809 Nelumbo nucifera HOM05D002510 ORTHO05D007210 4.1e-20 105.5 174 33.3
EL10Ac3g06545 Beta vulgaris HOM05D002510 ORTHO05D007210 5.4e-20 105.1 215 29.8
Prupe.2G213300 Prunus persica HOM05D002510 ORTHO05D007210 5.4e-20 105.1 238 30.3
PGR142G3054 Punica granatum HOM05D002510 ORTHO05D007210 5.4e-20 105.1 212 31.1
Gorai.013G025200 Gossypium raimondii HOM05D002510 ORTHO05D007210 9.2e-20 104.4 220 28.6
PSO384G1458 Papaver somniferum HOM05D002510 ORTHO05D007210 9.2e-20 104.4 235 31.1
Gohir.A13G021900 Gossypium hirsutum HOM05D002510 ORTHO05D007210 1.2e-19 104.0 220 28.2
Ciclev10030885m.g Citrus clementina HOM05D002510 ORTHO05D007210 1.6e-19 103.6 158 34.8
Pp3c15_14500 Physcomitrium patens HOM05D002510 ORTHO05D007210 1.6e-19 103.6 173 35.8
SGA_v2.0_scaffold51G18685 Striga asiatica HOM05D002510 ORTHO05D007210 1.6e-19 103.6 377 24.9
PSO339G3140 Papaver somniferum HOM05D002510 ORTHO05D007210 2.0e-19 103.2 238 31.9
Aqoxy2G01930 Aquilegia oxysepala HOM05D002510 ORTHO05D007210 3.5e-19 102.4 215 29.3
Nitab4.5_0000534g0010 Nicotiana tabacum HOM05D002510 ORTHO05D007210 3.5e-19 102.4 209 30.1
Nitab4.5_0001053g0050 Nicotiana tabacum HOM05D002510 ORTHO05D007210 7.8e-19 101.3 238 27.3
CDE02G1489 Ceratophyllum demersum HOM05D002510 ORTHO05D007210 1.0e-18 100.9 172 32.6
Rhsim09G0151500 Rhododendron simsii HOM05D002510 ORTHO05D007210 1.3e-18 100.5 390 24.6
Gohir.D13G022500 Gossypium hirsutum HOM05D002510 ORTHO05D007210 2.3e-18 99.8 230 27.4
CiPaw.01G272500 Carya illinoinensis HOM05D002510 ORTHO05D007210 3.9e-18 99.0 215 30.2
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 3.9e-18 99.0 263 28.5
Mapoly0061s0015 Marchantia polymorpha HOM05D002510 ORTHO05D007210 3.9e-18 99.0 248 27.8
SGA_v2.0_scaffold341G49348 Striga asiatica HOM05D002510 ORTHO05D007210 3.9e-18 99.0 216 27.8
FvH4_7g19460 Fragaria vesca HOM05D002510 ORTHO05D007210 6.6e-18 98.2 263 28.1
FAN03G2366 Fragaria x ananassa HOM05D002510 ORTHO05D007210 6.6e-18 98.2 263 28.5
Cfa001648 Carpinus fangiana HOM05D002510 ORTHO05D007210 8.6e-18 97.8 174 31.6
Zm00001eb378830 Zea mays HOM05D002510 ORTHO05D007210 8.6e-18 97.8 238 29.0
QL08p055755 Quercus lobata HOM05D002510 ORTHO05D007210 1.1e-17 97.4 243 28.0
Thecc.10G074100 Theobroma cacao HOM05D002510 ORTHO05D007210 1.5e-17 97.1 407 23.3
HPP92_008619 Vanilla planifolia HOM05D002510 ORTHO05D007210 1.9e-17 96.7 211 28.9
FAN06G2145 Fragaria x ananassa HOM05D002510 ORTHO05D007210 2.5e-17 96.3 156 34.0
HanXRQChr08g0207751 Helianthus annuus HOM05D001171 ORTHO05D006126 5.6e-17 95.1 231 31.2
vmacro04870 Vaccinium macrocarpon HOM05D002510 ORTHO05D007210 5.6e-17 95.1 158 31.6
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 7.3e-17 94.7 346 24.9
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 9.5e-17 94.4 250 28.4
RcHm_v2.0_Chr1g0363331 Rosa chinensis HOM05D002510 ORTHO05D007210 1.2e-16 94.0 263 27.8
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 2.1e-16 93.2 185 32.4
CANSAT01G1884 Cannabis sativa HOM05D001171 ORTHO05D006126 2.8e-16 92.8 225 28.9
Cre02.g108100 Chlamydomonas reinhardtii HOM05D001171 ORTHO05D006126 2.8e-16 92.8 216 29.6
ECA233G4311 Erigeron canadensis HOM05D001171 ORTHO05D006126 3.6e-16 92.4 182 34.1
Gohir.A01G160800 Gossypium hirsutum HOM05D001171 ORTHO05D006126 3.1e-15 89.4 226 28.8
Psat7g077720 Pisum sativum HOM05D001171 ORTHO05D006126 3.1e-15 89.4 173 32.9
CsaV3_6G032260 Cucumis sativus L. HOM05D001171 ORTHO05D006126 8.9e-15 87.8 175 31.4
Glyma.08G103300 Glycine max HOM05D001171 ORTHO05D006126 8.9e-15 87.8 206 29.6
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 1.5e-14 87.0 221 27.6
MCO03G206 Micromonas commoda HOM05D001171 ORTHO05D006126 1.5e-14 87.0 174 29.3
Dinv10966 Davidia involucrata HOM05D001171 ORTHO05D006126 2.6e-14 86.3 198 30.8
FAN17G1139 Fragaria x ananassa HOM05D001171 ORTHO05D006126 2.6e-14 86.3 228 28.5
EL10Ac6g13486 Beta vulgaris HOM05D001171 ORTHO05D006126 3.4e-14 85.9 198 31.3
MELO3C011454.2 Cucumis melo HOM05D001171 ORTHO05D006126 3.4e-14 85.9 175 31.4
Duzib248G1370 Durio zibethinus HOM05D001171 ORTHO05D006126 3.4e-14 85.9 173 31.2
Duzib268G1390 Durio zibethinus HOM05D001171 ORTHO05D006126 3.4e-14 85.9 195 29.7
Sed0016407 Sechium edule HOM05D001171 ORTHO05D006126 3.4e-14 85.9 173 31.8
FvH4_4g23910 Fragaria vesca HOM05D001171 ORTHO05D006126 4.4e-14 85.5 228 28.5
Cpa.g.sc43.41 Carica papaya HOM05D001171 ORTHO05D006126 5.8e-14 85.1 203 31.5
Thecc.02G210400 Theobroma cacao HOM05D001171 ORTHO05D006126 5.8e-14 85.1 173 31.8
FAN07G0777 Fragaria x ananassa HOM05D001171 ORTHO05D006126 7.5e-14 84.7 235 28.5
Lalb_Chr13g0294301 Lupinus albus HOM05D001171 ORTHO05D006126 1.3e-13 84.0 169 31.4
Phvul.002G174700 Phaseolus vulgaris HOM05D001171 ORTHO05D006126 1.3e-13 84.0 206 29.1
CDE05G2832 Ceratophyllum demersum HOM05D001171 ORTHO05D006126 1.7e-13 83.6 198 30.3
GSVIVG01010452001 Vitis vinifera HOM05D001171 ORTHO05D006126 2.2e-13 83.2 198 29.8
Mapoly0009s0031 Marchantia polymorpha HOM05D001171 ORTHO05D006126 2.9e-13 82.8 186 30.6
PGR102G0186 Punica granatum HOM05D001171 ORTHO05D006126 2.9e-13 82.8 175 32.6
Ciclev10030679m.g Citrus clementina HOM05D001171 ORTHO05D006126 4.9e-13 82.0 201 29.4
Pp3c11_25820 Physcomitrium patens HOM05D001171 ORTHO05D006126 4.9e-13 82.0 259 28.2
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.1e-12 80.9 266 27.1
Gohir.A05G310900 Gossypium hirsutum HOM05D001171 ORTHO05D006126 1.1e-12 80.9 173 30.1
Gohir.D05G311700 Gossypium hirsutum HOM05D001171 ORTHO05D006126 1.1e-12 80.9 173 30.1
Gorai.009G332800 Gossypium raimondii HOM05D001171 ORTHO05D006126 1.1e-12 80.9 173 30.1
Lj6A825T69 Lonicera japonica HOM05D001171 ORTHO05D006126 1.1e-12 80.9 217 28.1
PRCOL_00002212 Prasinoderma coloniale HOM05D001171 ORTHO05D006126 3.2e-12 79.3 258 29.1
arahy.Tifrunner.gnm1.ann1.2F0YN9 Arachis hypogaea HOM05D001171 ORTHO05D006126 2.0e-11 76.6 240 25.8
ClCG08G010100 Citrullus lanatus HOM05D001171 ORTHO05D006126 2.0e-11 76.6 175 29.7
Sabra10G0045500 Salix brachista HOM05D001171 ORTHO05D006126 1.3e-10 73.9 161 31.1
Pp3c9_12500 Physcomitrium patens HOM05D002510 ORTHO05D007210 1.7e-10 73.6 174 31.6
Aa31LG1G20400 Aethionema arabicum HOM05D002510 ORTHO05D007210 3.0e-10 72.8 381 21.5
Potri.010G060500 Populus trichocarpa HOM05D001171 ORTHO05D006126 3.0e-10 72.8 205 27.8
arahy.Tifrunner.gnm1.ann1.8PLQ7K Arachis hypogaea HOM05D001171 ORTHO05D006126 6.6e-10 71.6 263 24.3
Cpa.g.sc53.84 Carica papaya HOM05D002510 ORTHO05D007210 1.9e-09 70.1 132 32.6
SHI21363 Sapria himalayana HOM05D002510 ORTHO05D007210 4.3e-09 68.9 148 27.0
CSS0007795 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D007210 4.7e-08 65.5 212 24.5
Haze_16888 Corylus avellana HOM05D002510 ORTHO05D007210 8.1e-08 64.7 108 29.6
Manes.12G012600 Manihot esculenta HOM05D001171 ORTHO05D006126 6.8e-07 61.6 180 28.9


User provided reference genes

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