Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 0.0e+00 1703.3 999 100.0
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.9e-58 231.5 491 32.6
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.6e-24 119.4 210 32.9
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 2.7e-24 118.6 208 32.2
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 3.9e-23 114.8 209 34.4
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 1.5e-22 112.8 187 34.2
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 2.5e-22 112.1 217 32.7
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 5.6e-22 110.9 183 35.0
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 7.3e-22 110.5 198 33.3
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 7.3e-22 110.5 195 34.4
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 7.3e-22 110.5 195 34.4
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 9.6e-22 110.2 197 34.0
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 1.6e-21 109.4 187 35.3
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 2.8e-21 108.6 197 34.0
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 2.8e-21 108.6 181 34.3
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 2.8e-21 108.6 181 35.4
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 3.6e-21 108.2 181 34.3
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 3.6e-21 108.2 181 34.8
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 3.6e-21 108.2 198 32.3
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 3.6e-21 108.2 208 31.7
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 4.8e-21 107.8 184 35.3
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 4.8e-21 107.8 187 34.8
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 6.2e-21 107.5 196 33.2
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 6.2e-21 107.5 178 35.4
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 6.2e-21 107.5 197 33.5
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.4e-20 106.3 217 32.3
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.4e-20 106.3 183 33.3
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.4e-20 106.3 197 33.0
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.8e-20 105.9 197 31.0
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.8e-20 105.9 186 36.0
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 1.8e-20 105.9 175 37.1
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.8e-20 105.9 197 31.5
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.8e-20 105.9 197 33.0
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 2.4e-20 105.5 184 35.3
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 2.4e-20 105.5 191 32.5
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.4e-20 105.5 206 33.0
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 2.4e-20 105.5 182 35.2
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.1e-20 105.1 184 34.2
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 3.1e-20 105.1 216 31.9
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 4.0e-20 104.8 197 33.5
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 4.0e-20 104.8 196 33.7
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 5.3e-20 104.4 197 34.0
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 6.9e-20 104.0 192 32.8
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 6.9e-20 104.0 199 33.2
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 6.9e-20 104.0 179 35.2
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 9.0e-20 103.6 189 34.4
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 1.2e-19 103.2 186 34.9
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 1.2e-19 103.2 175 36.6
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 1.2e-19 103.2 199 33.2
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 1.5e-19 102.8 181 33.7
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.5e-19 102.8 212 32.1
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 1.5e-19 102.8 186 34.4
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.0e-19 102.4 197 32.5
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 3.4e-19 101.7 211 32.2
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 3.4e-19 101.7 190 34.7
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 3.4e-19 101.7 177 33.9
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 3.4e-19 101.7 185 33.0
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 4.5e-19 101.3 183 32.2
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 4.5e-19 101.3 178 33.7
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 4.5e-19 101.3 178 33.7
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 5.8e-19 100.9 178 33.7
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 5.8e-19 100.9 206 31.1
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 7.6e-19 100.5 175 36.6
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 7.6e-19 100.5 186 34.4
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 9.9e-19 100.1 181 32.6
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 9.9e-19 100.1 195 31.8
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 9.9e-19 100.1 190 32.6
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 9.9e-19 100.1 184 34.2
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 9.9e-19 100.1 181 34.3
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 9.9e-19 100.1 189 33.3
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.3e-18 99.8 187 32.6
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 1.7e-18 99.4 192 31.2
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.7e-18 99.4 176 33.5
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 2.2e-18 99.0 194 34.0
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 2.9e-18 98.6 189 33.9
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 2.9e-18 98.6 181 32.6
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.8e-18 98.2 200 29.5
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 3.8e-18 98.2 181 32.0
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 3.8e-18 98.2 206 30.1
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 4.9e-18 97.8 193 31.6
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 4.9e-18 97.8 193 31.6
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 8.4e-18 97.1 181 33.1
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 8.4e-18 97.1 184 31.5
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 8.4e-18 97.1 175 34.3
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 8.4e-18 97.1 205 29.8
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 8.4e-18 97.1 204 31.9
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 1.1e-17 96.7 194 31.4
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 1.4e-17 96.3 175 36.0
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 1.9e-17 95.9 194 31.4
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 1.9e-17 95.9 194 31.4
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 1.9e-17 95.9 194 31.4
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.9e-17 95.9 189 33.9
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 2.4e-17 95.5 194 31.4
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 2.4e-17 95.5 194 31.4
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 2.4e-17 95.5 193 31.1
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 3.2e-17 95.1 179 33.5
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 4.2e-17 94.7 179 33.5
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 4.2e-17 94.7 179 33.5
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 4.2e-17 94.7 179 33.5
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 4.2e-17 94.7 179 33.5
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 4.2e-17 94.7 179 33.5
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 4.2e-17 94.7 188 30.9
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 5.4e-17 94.4 187 33.2
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 7.1e-17 94.0 193 30.6
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 7.1e-17 94.0 187 29.9
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 9.3e-17 93.6 193 31.1
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.2e-16 93.2 162 32.7
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.2e-16 93.2 180 33.3
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 1.2e-16 93.2 185 33.5
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.6e-16 92.8 183 30.6
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 2.1e-16 92.4 195 32.3
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.5e-16 91.7 183 31.1
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.6e-16 91.3 186 32.3
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 4.6e-16 91.3 179 34.6
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.0e-16 90.9 183 31.1
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.0e-16 90.9 183 31.1
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.3e-15 89.7 340 26.2
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 1.8e-15 89.4 200 31.5
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 3.0e-15 88.6 207 30.9
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 3.0e-15 88.6 183 33.3
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.9e-15 88.2 159 33.3
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 2.5e-14 85.5 215 30.7
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 4.3e-14 84.7 174 30.5
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 9.6e-14 83.6 157 32.5
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.3e-13 83.2 248 26.6
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.6e-13 82.8 194 28.9
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 4.8e-13 81.3 125 40.0
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 1.1e-12 80.1 200 30.0
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.1e-12 80.1 219 27.4
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.4e-12 79.7 197 29.9
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 2.4e-12 79.0 187 31.6
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 4.0e-12 78.2 186 28.0
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 6.9e-12 77.4 169 32.5
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 6.9e-12 77.4 158 31.6
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 9.0e-12 77.0 173 32.4
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 3.4e-11 75.1 172 29.1
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.3e-10 73.2 197 27.9
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 2.2e-10 72.4 191 28.3
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 2.2e-10 72.4 191 28.3
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 3.2e-09 68.6 150 32.0
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 5.5e-09 67.8 212 26.4
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 7.1e-09 67.4 165 32.1
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 9.3e-09 67.0 130 30.8
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.2e-08 66.6 136 33.1
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.6e-08 66.2 146 30.8
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 2.1e-08 65.9 78 42.3
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.9e-08 63.9 127 30.7
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 7.9e-08 63.9 136 30.9
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 7.9e-08 63.9 124 34.7
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.8e-07 62.8 96 35.4
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 3.9e-07 61.6 195 29.7
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 8.7e-07 60.5 103 38.8


User provided reference genes

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