Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025897 Carpinus fangiana HOM05D031483 ORTHO05D123089 4.2e-259 897.5 450 100.0
Cfa024388 Carpinus fangiana HOM05D031483 ORTHO05D126588 7.3e-70 268.9 399 41.1
Cfa026151 Carpinus fangiana HOM05D031483 ORTHO05D124593 8.1e-21 105.9 430 24.4
Cfa024161 Carpinus fangiana HOM05D031483 ORTHO05D123198 9.3e-17 92.4 380 23.4
Nn8g38808 Nelumbo nucifera HOM05D003785 ORTHO05D004179 6.1e-08 63.2 257 26.1
HPP92_006283 Vanilla planifolia HOM05D000025 ORTHO05D000136 1.0e-07 62.4 368 23.1
Mapoly0163s0018 Marchantia polymorpha HOM05D001940 ORTHO05D002352 1.3e-07 62.0 262 28.2
SGA_v2.0_scaffold37G14791 Striga asiatica HOM05D000061 ORTHO05D000050 1.8e-07 61.6 251 26.7
Thecc.09G364200 Theobroma cacao HOM05D001940 ORTHO05D002352 1.8e-07 61.6 263 25.9
Potri.013G157900 Populus trichocarpa HOM05D001940 ORTHO05D002352 3.0e-07 60.8 263 26.2
CsaV3_3G044970 Cucumis sativus L. HOM05D000061 ORTHO05D000050 3.9e-07 60.5 271 24.0
TAR623G1483 Trochodendron aralioides HOM05D000507 ORTHO05D000416 3.9e-07 60.5 349 21.2
BcaB07g33489 Brassica carinata HOM05D000016 ORTHO05D000433 5.1e-07 60.1 407 23.1
MELO3C003872.2 Cucumis melo HOM05D000061 ORTHO05D000050 5.1e-07 60.1 271 24.4
PSO443G0012 Papaver somniferum HOM05D000507 ORTHO05D000416 5.1e-07 60.1 287 25.1
A04p23210 Brassica napus HOM05D001940 ORTHO05D002352 6.7e-07 59.7 188 29.8
Duzib168G0853 Durio zibethinus HOM05D001940 ORTHO05D002352 6.7e-07 59.7 263 26.2
Eucgr.J01844 Eucalyptus grandis HOM05D001940 ORTHO05D002352 6.7e-07 59.7 263 25.5
Nitab4.5_0004023g0020 Nicotiana tabacum HOM05D004559 ORTHO05D005283 6.7e-07 59.7 178 28.1
PSO384G0207 Papaver somniferum HOM05D000507 ORTHO05D000416 6.7e-07 59.7 285 24.9
EL10Ac4g08674 Beta vulgaris HOM05D000507 ORTHO05D000416 8.7e-07 59.3 287 24.4
COL.COLO4_11218 Corchorus olitorius HOM05D001940 ORTHO05D002352 8.7e-07 59.3 263 25.5
FvH4_3g40570 Fragaria vesca HOM05D001940 ORTHO05D002352 8.7e-07 59.3 264 25.4
FAN11G1645 Fragaria x ananassa HOM05D001940 ORTHO05D002352 8.7e-07 59.3 264 25.4
FAN16G1519 Fragaria x ananassa HOM05D001940 ORTHO05D002352 8.7e-07 59.3 264 25.4
FAN25G3748 Fragaria x ananassa HOM05D001940 ORTHO05D002352 1.1e-06 58.9 264 25.4
Lj5C749T4 Lonicera japonica HOM05D001940 ORTHO05D002352 1.1e-06 58.9 271 22.9
Manes.14G059100 Manihot esculenta HOM05D000025 ORTHO05D000040 1.1e-06 58.9 239 22.6
Rhsim04G0014300 Rhododendron simsii HOM05D000025 ORTHO05D000136 1.1e-06 58.9 285 22.1
AUR62005547 Chenopodium quinoa HOM05D000507 ORTHO05D000416 1.5e-06 58.5 261 23.8
CsaV3_2G002660 Cucumis sativus L. HOM05D000061 ORTHO05D000050 1.5e-06 58.5 352 23.6
Eucgr.D01067 Eucalyptus grandis HOM05D000025 ORTHO05D000136 1.5e-06 58.5 375 21.1
Glyma.14G205200 Glycine max HOM05D001940 ORTHO05D002352 1.5e-06 58.5 267 25.5
Rhsim04G0014200 Rhododendron simsii HOM05D000025 ORTHO05D000136 1.5e-06 58.5 179 25.7
VMungo0647G1236 Vigna mungo HOM05D001940 ORTHO05D002352 1.5e-06 58.5 263 25.9
MSTRG.12712 Avicennia marina HOM05D001940 ORTHO05D002352 1.9e-06 58.2 263 25.5
Eucgr.G03314 Eucalyptus grandis HOM05D000025 ORTHO05D000136 1.9e-06 58.2 191 27.2
Glyma.02G236500 Glycine max HOM05D001940 ORTHO05D002352 1.9e-06 58.2 267 25.5
Lju124A10T16 Lonicera japonica HOM05D000061 ORTHO05D000915 1.9e-06 58.2 215 25.1
VMungo0540G1878 Vigna mungo HOM05D001940 ORTHO05D002352 2.5e-06 57.8 265 24.5
CSS0012559 Camellia sinensis var. sinensis HOM05D000025 ORTHO05D000136 3.3e-06 57.4 252 24.2
MBI10_g12135_MAGBIO Magnolia biondii HOM05D000025 ORTHO05D000136 3.3e-06 57.4 180 27.8
Peaxi162Scf00244g00062 Petunia axillaris HOM05D000507 ORTHO05D000416 3.3e-06 57.4 175 25.1
AT3G10560 Arabidopsis thaliana HOM05D000507 ORTHO05D000416 4.3e-06 57.0 178 27.5
Cpa.g.sc12.181 Carica papaya HOM05D000025 ORTHO05D000136 4.3e-06 57.0 177 26.0
AUR62024186 Chenopodium quinoa HOM05D000507 ORTHO05D000416 4.3e-06 57.0 261 22.6
ClCG11G002820 Citrullus lanatus HOM05D000061 ORTHO05D000050 4.3e-06 57.0 352 23.0
MELO3C030409.2 Cucumis melo HOM05D000061 ORTHO05D000050 4.3e-06 57.0 389 23.4
SEGI_12254 Sequoiadendron giganteum HOM05D000016 ORTHO05D000450 4.3e-06 57.0 242 24.4
CANSAT11G0396 Cannabis sativa HOM05D000025 ORTHO05D000136 5.7e-06 56.6 407 19.9
Cpa.g.sc128.44 Carica papaya HOM05D000507 ORTHO05D000416 5.7e-06 56.6 266 25.2
Cc05_g05100 Coffea canephora HOM05D000025 ORTHO05D000136 5.7e-06 56.6 360 22.2
Dinv44184 Davidia involucrata HOM05D000061 ORTHO05D000915 5.7e-06 56.6 188 28.7
Lj6g0010605 Lotus japonicus HOM05D001940 ORTHO05D002352 5.7e-06 56.6 266 25.6
Zm00001eb368900 Zea mays HOM05D001940 ORTHO05D002352 5.7e-06 56.6 275 26.5
arahy.Tifrunner.gnm1.ann1.K1LFJJ Arachis hypogaea HOM05D001940 ORTHO05D002352 7.4e-06 56.2 258 24.8
Haze_07613 Corylus avellana HOM05D000025 ORTHO05D000040 7.4e-06 56.2 250 27.2
MELO3C003868.2 Cucumis melo HOM05D000061 ORTHO05D000050 7.4e-06 56.2 271 22.9
Nitab4.5_0005901g0010 Nicotiana tabacum HOM05D001940 ORTHO05D002352 7.4e-06 56.2 268 25.7
Sed0021784 Sechium edule HOM05D000061 ORTHO05D000050 7.4e-06 56.2 245 26.5
THA.LOC104822762 Tarenaya hassleriana HOM05D000061 ORTHO05D000050 7.4e-06 56.2 241 26.1
A05p38590 Brassica napus HOM05D000507 ORTHO05D000416 9.7e-06 55.8 174 25.3
BraA05t22650Z Brassica rapa HOM05D000507 ORTHO05D000416 9.7e-06 55.8 174 25.3
CARHR122510 Cardamine hirsuta HOM05D000016 ORTHO05D000433 9.7e-06 55.8 177 27.1
CDE06G2791 Ceratophyllum demersum HOM05D001940 ORTHO05D002352 9.7e-06 55.8 262 23.3
Cc04_g03930 Coffea canephora HOM05D000061 ORTHO05D000050 9.7e-06 55.8 256 26.2
Hma1.2p1_0211F.1_g089800 Hydrangea macrophylla HOM05D000093 ORTHO05D000814 9.7e-06 55.8 178 28.7
Lj5C765G5 Lonicera japonica HOM05D001940 ORTHO05D002352 9.7e-06 55.8 181 23.8
Rhsim04G0014400 Rhododendron simsii HOM05D000025 ORTHO05D000136 9.7e-06 55.8 285 21.8
Rhsim04G0014500 Rhododendron simsii HOM05D000025 ORTHO05D000136 9.7e-06 55.8 276 22.1
Sp4g13040 Schrenkiella parvula HOM05D001940 ORTHO05D002352 9.7e-06 55.8 266 24.4
Sc06g0008060 Simmondsia chinensis HOM05D001940 ORTHO05D002352 9.7e-06 55.8 267 24.0


User provided reference genes

Program Settings