Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 4.8e-274 947.2 472 100.0
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 1.5e-86 324.3 453 41.1
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 2.7e-83 313.5 451 39.9
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 2.7e-83 313.5 474 38.6
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 4.6e-83 312.8 446 40.8
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 4.6e-83 312.8 452 40.9
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 4.6e-83 312.8 474 39.0
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 6.0e-83 312.4 451 40.1
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 1.3e-82 311.2 452 40.9
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 1.7e-82 310.8 450 40.7
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 1.7e-82 310.8 453 40.0
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 2.3e-82 310.5 455 39.1
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 6.6e-82 308.9 443 40.0
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 6.6e-82 308.9 453 39.1
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 6.6e-82 308.9 451 40.1
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 6.6e-82 308.9 449 39.6
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 8.7e-82 308.5 454 38.8
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 8.7e-82 308.5 450 38.9
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 8.7e-82 308.5 451 39.2
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 1.1e-81 308.1 451 40.6
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 1.5e-81 307.8 450 40.0
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 3.3e-81 306.6 451 39.5
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 5.6e-81 305.8 456 39.9
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 5.6e-81 305.8 449 38.8
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 7.3e-81 305.4 452 40.7
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 7.3e-81 305.4 452 39.6
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 7.3e-81 305.4 452 40.3
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 7.3e-81 305.4 460 40.0
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 9.6e-81 305.1 451 40.4
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 9.6e-81 305.1 450 38.7
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 9.6e-81 305.1 452 40.5
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 1.3e-80 304.7 450 39.8
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.3e-80 304.7 446 39.9
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 2.8e-80 303.5 455 41.1
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 3.6e-80 303.1 451 38.4
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 4.8e-80 302.8 452 39.4
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 4.8e-80 302.8 451 39.2
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 4.8e-80 302.8 454 39.6
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 6.2e-80 302.4 450 38.0
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 8.1e-80 302.0 450 39.3
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 8.1e-80 302.0 458 39.1
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 8.1e-80 302.0 442 40.5
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 8.1e-80 302.0 463 38.9
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 1.1e-79 301.6 450 39.6
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 1.4e-79 301.2 451 39.0
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 1.4e-79 301.2 451 39.2
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 1.4e-79 301.2 450 40.4
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 2.4e-79 300.4 476 38.7
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 2.4e-79 300.4 449 38.8
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 2.4e-79 300.4 451 38.8
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 2.4e-79 300.4 442 40.3
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 3.1e-79 300.1 463 38.7
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 4.0e-79 299.7 472 36.7
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 5.3e-79 299.3 449 39.2
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 6.9e-79 298.9 451 39.0
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 6.9e-79 298.9 449 38.5
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 9.0e-79 298.5 474 39.0
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 1.2e-78 298.1 451 39.7
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 1.2e-78 298.1 449 41.2
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 1.5e-78 297.7 452 38.9
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 1.5e-78 297.7 449 41.2
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.6e-78 297.0 458 39.1
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 2.6e-78 297.0 450 39.6
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 3.4e-78 296.6 449 41.0
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 5.8e-78 295.8 460 40.0
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 7.6e-78 295.4 452 40.0
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.7e-77 294.3 472 36.4
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 2.2e-77 293.9 454 39.4
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 2.9e-77 293.5 459 38.8
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 4.9e-77 292.7 448 38.6
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 4.9e-77 292.7 451 39.2
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 8.4e-77 292.0 449 39.4
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 8.4e-77 292.0 447 38.9
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 8.4e-77 292.0 453 40.8
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 1.1e-76 291.6 444 38.1
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 1.4e-76 291.2 451 38.4
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 1.9e-76 290.8 449 39.4
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 1.9e-76 290.8 458 40.2
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 2.4e-76 290.4 449 38.8
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 2.4e-76 290.4 470 40.9
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 3.2e-76 290.0 449 38.8
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 3.2e-76 290.0 449 39.4
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 3.2e-76 290.0 453 39.3
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 2.1e-75 287.3 450 38.7
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 2.7e-75 287.0 456 38.4
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 2.7e-75 287.0 456 38.4
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 1.3e-74 284.6 435 39.3
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 1.8e-74 284.3 450 37.8
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 2.3e-74 283.9 439 38.5
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 3.0e-74 283.5 404 41.1
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 5.1e-74 282.7 445 38.2
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 6.7e-74 282.3 451 38.6
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 1.1e-73 281.6 466 39.5
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 1.9e-73 280.8 447 39.1
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 2.5e-73 280.4 448 37.9
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 2.1e-72 277.3 490 36.5
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.4e-71 273.9 450 36.0
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 7.6e-70 268.9 465 36.6
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 1.4e-68 264.6 449 37.9
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 3.2e-68 263.5 369 43.1
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 3.5e-67 260.0 385 40.0
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 1.3e-66 258.1 360 40.3
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 1.8e-66 257.7 463 36.1
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 1.6e-56 224.6 360 36.7
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 2.2e-56 224.2 371 37.5
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 2.3e-50 204.1 298 41.6
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 3.0e-50 203.8 399 35.3
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 2.4e-47 194.1 448 33.7
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 6.1e-43 179.5 264 39.8
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 1.8e-39 167.9 280 36.8
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 3.2e-36 157.1 473 27.7
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 4.1e-15 87.0 172 37.8
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 2.0e-14 84.7 166 36.1
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 2.0e-14 84.7 166 36.1
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 2.0e-14 84.7 166 36.1
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 1.7e-13 81.6 78 48.7
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 3.4e-09 67.4 222 25.2


User provided reference genes

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