Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 0.0e+00 1188.7 630 100.0
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 9.6e-52 209.1 471 30.6
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 2.8e-51 207.6 522 28.7
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 8.1e-51 206.1 522 28.9
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 4.0e-50 203.8 452 31.2
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 5.2e-50 203.4 463 29.6
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 2.6e-49 201.1 497 29.4
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 9.9e-49 199.1 465 29.2
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 1.3e-48 198.7 457 28.7
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 1.3e-48 198.7 555 28.1
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.7e-48 198.4 462 29.2
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 2.9e-48 197.6 560 28.9
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 4.9e-48 196.8 499 28.1
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 4.9e-48 196.8 449 31.0
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 6.4e-48 196.4 505 30.1
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 6.4e-48 196.4 442 31.4
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 8.4e-48 196.1 560 28.9
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 1.1e-47 195.7 451 31.5
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 1.1e-47 195.7 447 30.9
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.4e-47 195.3 579 28.0
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.9e-47 194.9 455 30.5
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.9e-47 194.9 495 29.9
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.9e-47 194.9 565 28.8
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 3.2e-47 194.1 472 29.9
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 3.2e-47 194.1 462 28.8
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 3.2e-47 194.1 464 28.9
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 3.2e-47 194.1 449 31.0
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 3.2e-47 194.1 463 28.1
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 4.2e-47 193.7 520 27.9
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 5.4e-47 193.4 459 29.8
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 5.4e-47 193.4 449 30.7
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 5.4e-47 193.4 448 30.6
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 5.4e-47 193.4 475 30.1
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 5.4e-47 193.4 558 28.0
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 7.1e-47 193.0 455 29.9
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 7.1e-47 193.0 447 30.6
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 7.1e-47 193.0 452 30.8
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 7.1e-47 193.0 581 26.9
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 9.3e-47 192.6 464 29.5
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 9.3e-47 192.6 467 29.3
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 9.3e-47 192.6 497 27.8
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 1.6e-46 191.8 475 29.5
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 1.6e-46 191.8 520 27.7
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.6e-46 191.8 528 26.7
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 2.1e-46 191.4 541 28.1
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 2.1e-46 191.4 401 30.9
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 2.7e-46 191.0 449 30.5
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.7e-46 191.0 450 30.2
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.7e-46 191.0 541 28.3
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 2.7e-46 191.0 447 30.6
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 2.7e-46 191.0 448 30.8
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 4.6e-46 190.3 462 29.0
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 4.6e-46 190.3 460 28.0
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 4.6e-46 190.3 473 28.1
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 4.6e-46 190.3 500 29.0
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 6.0e-46 189.9 456 29.4
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 6.0e-46 189.9 467 30.2
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 6.0e-46 189.9 637 26.7
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 7.8e-46 189.5 521 27.4
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 7.8e-46 189.5 453 29.6
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 1.0e-45 189.1 524 27.5
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 1.0e-45 189.1 422 30.6
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 1.0e-45 189.1 500 29.0
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 1.3e-45 188.7 523 27.0
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 1.3e-45 188.7 503 28.8
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 1.3e-45 188.7 526 27.4
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 1.7e-45 188.3 499 29.3
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 1.7e-45 188.3 496 29.4
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 1.7e-45 188.3 507 29.0
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.7e-45 188.3 463 29.8
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.7e-45 188.3 449 29.4
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 2.3e-45 188.0 475 27.8
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 3.0e-45 187.6 478 28.9
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 3.0e-45 187.6 459 28.1
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 3.0e-45 187.6 460 28.9
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 3.0e-45 187.6 456 28.9
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 3.9e-45 187.2 465 29.0
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 3.9e-45 187.2 472 29.0
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 3.9e-45 187.2 459 28.1
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 5.1e-45 186.8 452 30.5
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 5.1e-45 186.8 548 27.4
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 6.6e-45 186.4 598 27.3
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 8.7e-45 186.0 487 28.3
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 1.9e-44 184.9 465 28.8
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 1.9e-44 184.9 613 27.1
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 2.5e-44 184.5 633 26.7
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 3.3e-44 184.1 471 27.8
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 3.3e-44 184.1 452 30.1
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 5.6e-44 183.3 581 28.2
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 5.6e-44 183.3 576 28.6
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 7.3e-44 183.0 557 28.7
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 9.6e-44 182.6 448 30.4
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.3e-43 182.2 448 28.6
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 1.3e-43 182.2 574 27.0
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 1.6e-43 181.8 446 29.6
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 2.1e-43 181.4 583 28.0
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 3.6e-43 180.6 453 27.6
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 4.8e-43 180.3 445 28.3
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 4.8e-43 180.3 445 28.8
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 6.2e-43 179.9 504 28.6
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 6.2e-43 179.9 435 29.7
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 6.2e-43 179.9 547 27.6
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 8.1e-43 179.5 575 26.8
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 1.1e-42 179.1 444 29.5
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 1.4e-42 178.7 579 25.6
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 1.4e-42 178.7 574 27.5
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 1.8e-42 178.3 596 27.5
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.8e-42 178.3 552 27.5
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.8e-42 178.3 445 29.0
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 3.1e-42 177.6 535 26.4
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 3.1e-42 177.6 510 26.5
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 3.1e-42 177.6 575 26.6
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 4.0e-42 177.2 491 27.3
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 5.3e-42 176.8 445 29.2
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 6.9e-42 176.4 449 28.1
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 1.2e-41 175.6 586 26.8
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 3.4e-41 174.1 563 26.6
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 5.8e-41 173.3 447 28.6
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.9e-41 172.6 444 30.0
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 8.4e-40 169.5 510 26.7
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 1.4e-39 168.7 654 25.2
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.4e-39 168.7 446 28.5
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 1.9e-39 168.3 444 28.6
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 3.2e-39 167.5 451 30.2
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 1.2e-38 165.6 581 26.2
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 2.3e-37 161.4 407 27.3
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 3.0e-37 161.0 392 27.8
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 5.1e-37 160.2 492 26.6
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 5.6e-36 156.8 447 27.7
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 7.4e-36 156.4 387 28.2
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.6e-36 156.0 408 29.9
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 2.8e-35 154.5 576 26.0
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 4.8e-35 153.7 528 24.2
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 8.1e-35 152.9 530 24.0
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 1.9e-31 141.7 304 30.6
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 2.4e-31 141.4 591 25.4
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 2.7e-30 137.9 402 27.6
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 1.5e-28 132.1 210 35.7
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 2.1e-27 128.3 404 25.5
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 3.1e-26 124.4 452 25.7
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 7.6e-25 119.8 214 33.6
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.3e-23 112.8 332 26.8
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 3.5e-22 110.9 332 25.6
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 3.5e-22 110.9 337 25.2
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 4.6e-22 110.5 184 37.0
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 5.7e-20 103.6 356 26.4
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 7.4e-20 103.2 219 33.3
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 2.1e-19 101.7 489 22.3
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 3.4e-17 94.4 133 39.1
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.3e-16 92.4 132 37.1
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 2.9e-16 91.3 333 22.8
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 8.5e-16 89.7 598 21.4
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.4e-15 89.0 580 21.6
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 4.6e-14 84.0 94 43.6
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 1.2e-09 69.3 253 23.3
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 4.5e-09 67.4 232 26.3
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 5.9e-09 67.0 148 31.1
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 7.7e-09 66.6 572 22.2
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 3.6e-06 57.8 204 25.5
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 6.1e-06 57.0 165 27.3


User provided reference genes

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